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1. Joint species distribution models (JSDMs) have gained considerable traction among ecologists over the past decade, due to their capacity to answer a wide range of questions at both the species- and the community-level. The family of…

Methodology · Statistics 2024-03-19 Pekka Korhonen , Francis K. C. Hui , Jenni Niku , Sara Taskinen , Bert van der Veen

This paper presents an evaluation of several approaches of plants species distribution modeling based on spatial, environmental and co-occurrences data using machine learning methods. In particular, we re-evaluate the environmental…

Neural and Evolutionary Computing · Computer Science 2019-09-20 Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly

Access to complete data in large-scale networks is often infeasible. Therefore, the problem of missing data is a crucial and unavoidable issue in the analysis and modeling of real-world social networks. However, most of the research on…

Social and Information Networks · Computer Science 2023-06-05 Maryam Ramezani , Aryan Ahadinia , Amirmohammad Ziaei , Hamid R. Rabiee

This article analyzes the problem of estimating the time until an event occurs, also known as survival modeling. We observe through substantial experiments on large real-world datasets and use-cases that populations are largely…

Machine Learning · Computer Science 2019-05-13 David Hubbard , Benoit Rostykus , Yves Raimond , Tony Jebara

Deep learning is used in computer vision problems with important applications in several scientific fields. In ecology for example, there is a growing interest in deep learning for automatizing repetitive analyses on large amounts of…

This paper proposes a method for semiparametric regression analysis of large-scale data which are distributed over multiple hosts. This enables modeling of nonlinear relationships and both the batch approach, where analysis starts after all…

Methodology · Statistics 2013-06-21 Jan Luts

A model of pattern formation in living systems is presented. The pattern is achieved by the sequential interaction of two signaling pathways. The coupling of the pattern to the (thick) epithelial sheet changes is given, when the Gauss…

Tissues and Organs · Quantitative Biology 2009-05-11 Frederick W. Cummings

Models of the spatial distribution of animals provide useful tools to help ecologists quantify species-environment relationships, and they are increasingly being used to help determine the impacts of climate and habitat changes on species.…

Methodology · Statistics 2020-09-04 Joe Watson , Ruth Joy , Dominic Tollit , Sheila J Thornton , Marie Auger-Méthé

In ecology we may find scenarios where the same phenomenon (species occurrence, species abundance, etc.) is observed using two different types of samplers. For instance, species data can be collected from scientific sampling with a…

Detecting butterfly hybrids requires knowledge of the parent subspecies, and the process can be tedious when encountering a new subspecies. This study focuses on a specific scenario where a model trained to recognize hybrid species A can…

Computational Engineering, Finance, and Science · Computer Science 2025-04-03 Bo-Kai Ruan , Yi-Zeng Fang , Hong-Han Shuai , Juinn-Dar Huang

Cyber-physical systems come with increasingly complex architectures and failure modes, which complicates the task of obtaining accurate system reliability models. At the same time, with the emergence of the (industrial) Internet-of-Things,…

Formal Languages and Automata Theory · Computer Science 2019-09-16 Alexis Linard , Doina Bucur , Marielle Stoelinga

Self-organizing complex systems typically are comprised of a large number of frequently similar components or events. Through their process, a pattern at the global-level of a system emerges solely from numerous interactions among the…

Artificial Intelligence · Computer Science 2007-05-23 Vitorino Ramos , Ajith Abraham

A large number of models of the species abundance distribution (SAD) have been proposed, many of which are generically similar to the log-normal distribution, from which they are often indistinguishable when describing a given data set.…

Populations and Evolution · Quantitative Biology 2008-05-02 Craig R. Powell , Alan J. McKane

We present a new methodology to model total abundance by merging count data information from surveys with different sampling protocols. The proposed methods are used for data from national breeding bird monitoring programs in Norway and…

Hybrid modeling aims to augment traditional theory-driven models with machine learning components that learn unknown parameters, sub-models or correction terms from data. In this work, we build on FluxRGNN, a recently developed hybrid model…

Machine Learning · Computer Science 2024-08-09 Fiona Lippert , Bart Kranstauber , Patrick Forré , E. Emiel van Loon

Classification and characterization of variable phenomena and transient phenomena are critical for astrophysics and cosmology. These objects are commonly studied using photometric time series or spectroscopic data. Given that many ongoing…

Instrumentation and Methods for Astrophysics · Physics 2020-01-08 Javiera Astudillo , Pavlos Protopapas , Karim Pichara , Pablo Huijse

Support Vector Regression (SVR) has achieved high performance on forecasting future behavior of random systems. However, the performance of SVR models highly depends upon the appropriate choice of SVR parameters. In this study, a novel…

Machine Learning · Computer Science 2019-05-29 Mohammadreza Ghanbari , Hamidreza Arian

Ecologists have long suspected that species are more likely to interact if their traits match in a particular way. For example, a pollination interaction may be more likely if the proportions of a bee's tongue fit a plant's flower shape.…

Populations and Evolution · Quantitative Biology 2019-11-05 Maximilian Pichler , Virginie Boreux , Alexandra-Maria Klein , Matthias Schleuning , Florian Hartig

Plant traits such as leaf carbon content and leaf mass are essential variables in the study of biodiversity and climate change. However, conventional field sampling cannot feasibly cover trait variation at ecologically meaningful spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Eya Cherif , Arthur Ouaknine , Luke A. Brown , Phuong D. Dao , Kyle R. Kovach , Bing Lu , Daniel Mederer , Hannes Feilhauer , Teja Kattenborn , David Rolnick

Increasing climate change and habitat loss are driving unprecedented shifts in species distributions. Conservation professionals urgently need timely, high-resolution predictions of biodiversity risks, especially in ecologically diverse…

Quantitative Methods · Quantitative Biology 2025-12-03 Hammed A. Akande , Abdulrauf A. Gidado