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For many macromolecular systems the accurate sampling of the relevant regions on the potential energy surface cannot be obtained by a single, long Molecular Dynamics (MD) trajectory. New approaches are required to promote more efficient…

Computational Engineering, Finance, and Science · Computer Science 2016-06-02 Vivekanandan Balasubramanian , Iain Bethune , Ardita Shkurti , Elena Breitmoser , Eugen Hruska , Cecilia Clementi , Charles Laughton , Shantenu Jha

Laser-plasma based experiments are always more demanding about the plasma features which need to be generated during the interaction. This is valid for laser-plasma acceleration as well as for inertial confinement fusion experiments. Most…

Plasma Physics · Physics 2025-09-03 F. Filippi , M. Cipriani , S. Mastrostefano , M. Scisciò , F. Consoli

The Simulation Environment for Atomistic and Molecular Modeling (SEAMM) is an open-source software package written in Python that provides a graphical interface for setting up, executing, and analyzing molecular and materials simulations.…

Scientific applications produce a huge amount of data, which imposes serious management and analysis challenges. In particular, limitations in current database management systems prevent their adoption in simulation applications, in which…

Databases · Computer Science 2019-03-18 Hermano Lustosa , Fabio Porto

Computational meshes, as a way to partition space, form the basis of much of PDE simulation technology, for instance for the finite element and finite volume discretization methods. In complex simulations, we are often driven to modify an…

Mathematical Software · Computer Science 2025-06-23 Matthew G. Knepley

QC Lab is an open-source Python package for QC dynamics simulations aimed to promote the development of QC algorithms, and their application to a wide variety of relevant model problems. It follows a modular design that facilitates…

Chemical Physics · Physics 2025-10-28 Alex Krotz , Ethan Byrd , Ken Miyazaki , Roel Tempelaar

PySEMTools is a Python-based library for post-processing simulation data produced with high-order hexahedral elements in the context of the spectral element method in computational fluid dynamics. It aims to minimize intermediate steps…

Computational Physics · Physics 2025-04-18 Adalberto Perez , Siavash Toosi , Tim Felle Olsen , Stefano Markidis , Philipp Schlatter

Simulations are valuable tools for empirically evaluating the properties of statistical methods and are primarily employed in methodological research to draw general conclusions about methods. In addition, they can often be useful to…

Other Statistics · Statistics 2025-10-08 Anne-Laure Boulesteix , Patrick Callahan , Luzia Hanssum , Vincent Gaertner , Eva Hoster

Plyades: A Python Library for Space Mission Design Designing a space mission is a computation-heavy task. Software tools that conduct the necessary numerical simulations and optimizations are therefore indispensable. The usability of…

Instrumentation and Methods for Astrophysics · Physics 2016-07-05 Helge Eichhorn , Reiner Anderl

We present the first public release (v0.1) of the open-source GADGET Dataframe Library: gadfly. The aim of this package is to leverage the capabilities of the broader python scientific computing ecosystem by providing tools for analyzing…

Instrumentation and Methods for Astrophysics · Physics 2016-10-19 Jacob Hummel

This paper presents a lightweight, open-source and high-performance python package for solving peridynamics problems in solid mechanics. The development of this solver is motivated by the need for fast analysis tools to achieve the large…

Software Engineering · Computer Science 2021-09-15 B. Boys , T. J. Dodwell , M. Hobbs , M. Girolami

We present a python object-oriented computer program for simulating various aspects of laser cooling physics. Our software is designed to be both easy to use and adaptable, allowing the user to specify the level structure, magnetic field…

Atomic Physics · Physics 2026-01-16 S. Eckel , D. S. Barker , E. B. Norrgard , J. Scherschligt

We present Lyncs-API, a Python API for Lattice QCD applications currently under development. Lyncs aims to bring several widely used libraries for Lattice QCD under a common framework. Lyncs flexibly links to libraries for CPUs and GPUs in…

High Energy Physics - Lattice · Physics 2022-01-12 Simone Bacchio , Jacob Finkenrath , Christodoulos Stylianou

We introduce atomSmltr, a Python package for simulating laser cooling in complex magnetic field and laser beams geometries. The package features a modular design that enables users to easily construct experimental setups, including magnetic…

Atomic Physics · Physics 2026-02-19 Mateo Weill , Andrea Bertoldi , Alexandre Dareau

Within academia and industry, there has been a need for expansive simulation frameworks that include model-based simulation of sensors, mobile vehicles, and the environment around them. To this end, the modular, real-time, and open-source…

A method for the optimisation and advanced studies of a laser-plasma electron injector is presented, based on a truncated ionisation injection scheme for high quality beam production. The SMILEI code is used with laser envelope…

Large language models (LLMs) are increasingly used for generating parallel scientific codes, with a primary focus on generating functionally correct code. Recent work has focused on generating performant code, with an emphasis on its…

Artificial Intelligence · Computer Science 2026-05-12 Matthew T. Dearing , Yiheng Tao , Xingfu Wu , Zhiling Lan , Valerie Taylor

Synthesizing controllers for large, complex, and distributed systems is a challenging task. Numerous proposed methods exist in the literature, but it is difficult for practitioners to apply them -- most proposed synthesis methods lack…

Systems and Control · Electrical Eng. & Systems 2020-09-30 Shih-Hao Tseng , Jing Shuang Li

relentless is an open-source Python package that enables the optimization of objective functions computed using molecular dynamics simulations. It has a high-level, extensible interface for model parametrization; setting up, running, and…

Soft Condensed Matter · Physics 2024-08-07 Adithya N Sreenivasan , C. Levi Petix , Zachary M. Sherman , Michael P. Howard

Existing LoRaWAN/LoRa simulators consist of large, complicated C++ codebases and often do not support all device classes. This paper presents the design of a simple to use, Python-based discrete-event simulator that addresses these gaps…

Networking and Internet Architecture · Computer Science 2026-05-21 Matthijs Reyers , Niels Hokke , R. R. Venkatesha Prasad
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