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In this dissertation, a fully object-oriented, fully relativistic, multi-dimensional Particle-In-Cell code was developed and applied to answer key questions in plasma-based accelerator research. The simulations increase the understanding of…

Computational Physics · Physics 2015-03-03 Roy G. Hemker

Coupled laser arrays exhibit rich and complex physical properties, making them powerful tools for exploring a wide range of phenomena. They enable efficient ground-state optimization of complex landscapes, solve computational problems,…

Optics · Physics 2025-02-10 Simon Mahler

Recently proposed modifications of the standard particle-in-cell (PIC) method resolve long-standing limitations such as exact preservation of physically conserved quantities and unbiased ensemble down-sampling. Such advances pave the way…

Plasma Physics · Physics 2026-03-13 Frida Brogren , Christoffer Olofsson , Joel Magnusson , Arkady Gonoskov

Atomic-level simulations are widely used to study biomolecules and their dynamics. A common goal in such studies is to compare simulations of a molecular system under several conditions -- for example, with various mutations or bound…

Biomolecules · Quantitative Biology 2025-01-07 Martin Vögele , Neil J. Thomson , Sang T. Truong , Jasper McAvity , Ulrich Zachariae , Ron O. Dror

Structural equation modelling (SEM) is a multivariate statistical technique for estimating complex relationships between observed and latent variables. Although numerous SEM packages exist, each of them has limitations. Some packages are…

Applications · Statistics 2021-06-02 Meshcheryakov Georgy , Igolkina Anna

Large eddy simulation (LES) has become the de-facto computational tool for modeling complex reacting flows, especially in gas turbine applications. However, readily usable general-purpose LES codes for complex geometries are typically…

Computational Physics · Physics 2017-05-16 Malik Hassanaly , Heeseok Koo , Christopher Lietz , Shao Teng Chong , Venkat Raman

The molecular dynamics simulation code ls1 mardyn is presented. It is a highly scalable code, optimized for massively parallel execution on supercomputing architectures, and currently holds the world record for the largest molecular…

We present the open-source image processing software package PySAP (Python Sparse data Analysis Package) developed for the COmpressed Sensing for Magnetic resonance Imaging and Cosmology (COSMIC) project. This package provides a set of…

Instrumentation and Methods for Astrophysics · Physics 2020-07-03 S. Farrens , A. Grigis , L. El Gueddari , Z. Ramzi , Chaithya G. R. , S. Starck , B. Sarthou , H. Cherkaoui , P. Ciuciu , J. -L. Starck

The analysis of complex multiphysics astrophysical simulations presents a unique and rapidly growing set of challenges: reproducibility, parallelization, and vast increases in data size and complexity chief among them. In order to meet…

Instrumentation and Methods for Astrophysics · Physics 2015-05-20 Matthew J. Turk , Britton D. Smith , Jeffrey S. Oishi , Stephen Skory , Samuel W. Skillman , Tom Abel , Michael L. Norman

We present the ALPS (Algorithms and Libraries for Physics Simulations) project, an international open source software project to develop libraries and application programs for the simulation of strongly correlated quantum lattice models…

Nowadays, most of the hyperspectral image (HSI) fusion experiments are based on simulated datasets to compare different fusion methods. However, most of the spectral response functions and spatial downsampling functions used to create the…

Computer Vision and Pattern Recognition · Computer Science 2024-07-08 Shuangliang Li

We report on three numerical experiments on the implementation of Time-Delay Interferometry (TDI) for LISA, performed with Synthetic LISA, a C++/Python package that we developed to simulate the LISA science process at the level of…

General Relativity and Quantum Cosmology · Physics 2009-11-10 Michele Vallisneri

Portability, performance, and productivity are three critical dimensions for evaluating a programming model or compiler infrastructure. Several modern programming models for computational science focus on performance and portability. On the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-01 Brian Kelley , Sivasankaran Rajamanickam

In the effort of achieving high-energetic ion beams from the interaction of ultrashort laser pulses with a plasma, volumetric acceleration mechanisms beyond Target Normal Sheath Acceleration have gained attention. A relativisticly intense…

MuSim is a new user-friendly program designed to interface to many different particle simulation codes, regardless of their data formats or geometry descriptions. It presents the user with a compelling graphical user interface that includes…

We present an open-source simulation framework for optically detected magnetic resonance, developed in Python. The framework allows users to construct, manipulate, and evolve multipartite quantum systems that consist of spins and electronic…

Quantum Physics · Physics 2025-01-13 Laura A. Völker , John M. Abendroth , Christian L. Degen , Konstantin Herb

The Laser Interferometer Space Antenna (LISA), space-based gravitational wave observatory involves a complex multidimensional closed-loop dynamical system. Its instrument performance is expected to be less efficiently isolated from platform…

General Relativity and Quantum Cosmology · Physics 2023-09-05 Lavinia Heisenberg , Henri Inchauspé , Dam Quang Nam , Orion Sauter , Ricardo Waibel , Peter Wass

BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provide a 'brainless' development experience, minimizing…

The recomputability and reproducibility of results from scientific software requires access to both the source code and all associated input and output data. However, the full collection of these resources often does not accompany the key…

Computational Engineering, Finance, and Science · Computer Science 2015-12-24 Christian T. Jacobs , Alexandros Avdis , Gerard J. Gorman , Matthew D. Piggott

Type-III-burst radio signals can be mimicked in the laboratory via laser-plasma interaction. Instead of an electron beam generating Langmuir waves (LW) in the interplanetary medium, the LWs are created by a laser interacting with a…

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