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SMILEI is a collaborative, open-source, object-oriented (C++) particle-in-cell code. To benefit from the latest advances in high-performance computing (HPC), SMILEI is co-developed by both physicists and HPC experts. The code's structures,…

MaRDI Open Interfaces is a software project aimed at improving reuse and interoperability in Scientific Computing by alleviating the difficulties of crossing boundaries between different programming languages, in which numerical packages…

Mathematical Software · Computer Science 2025-11-18 Dmitry I. Kabanov , Stephan Rave , Mario Ohlberger

Photoacoustic (PA) imaging systems based on clinical linear ultrasound arrays have become increasingly popular in translational PA research. Such systems can be more easily integrated in a clinical workflow due to the simultaneous access to…

Efficient coupling of intense laser pulses to solid-density matter is critical to many applications including ion acceleration for cancer therapy. At relativistic intensities, the focus has been mainly on investigating various laser beams…

Plasma Physics · Physics 2015-09-24 L. L. Ji , J. Snyder , A. Pukhov , R. R. Freeman , K. U. Akli

This work introduces ParAMS -- a versatile Python package that aims to make parameterization workflows in computational chemistry and physics more accessible, transparent and reproducible. We demonstrate how ParAMS facilitates the parameter…

Chemical Physics · Physics 2021-05-18 Leonid Komissarov , Robert Rüger , Matti Hellström , Toon Verstraelen

Despite impressive success of machine learning algorithms in clinical natural language processing (cNLP), rule-based approaches still have a prominent role. In this paper, we introduce medspaCy, an extensible, open-source cNLP library based…

Computation and Language · Computer Science 2021-06-16 Hannah Eyre , Alec B Chapman , Kelly S Peterson , Jianlin Shi , Patrick R Alba , Makoto M Jones , Tamara L Box , Scott L DuVall , Olga V Patterson

Three dimensional Particle in Cell simulations of Laser Wakefield Acceleration require a considerable amount of resources but are necessary to have realistic predictions and to design future experiments. The planned experiments for the…

LASSi is a tool aimed at analyzing application usage and contention caused by use of shared resources (filesystem or network) in a HPC system. LASSi was initially developed to support the ARCHER system where there are large variations in…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-11 Karthee Sivalingam , Harvey Richardson , Adrian Tate , Martin Lafferty

Understanding porous media flow is inherently a multi-scale challenge, where at the core lies the aggregation of pore-level processes to a continuum, or Darcy-scale, description. This challenge is directly mirrored in image processing,…

Mathematical Software · Computer Science 2023-01-16 Jan Martin Nordbotten , Benyamine Benali , Jakub Wiktor Both , Bergit Brattekås , Erlend Storvik , Martin A. Fernø

The current landscape of scientific research is widely based on modeling and simulation, typically with complexity in the simulation's flow of execution and parameterization properties. Execution flows are not necessarily straightforward…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-26 Eduardo Ponce , Brittany Stephenson , Suzanne Lenhart , Judy Day , Gregory D. Peterson

Since its launch in 2008, the Fermi Large Area Telescope (LAT) allowed us to peek into the extremely energetic side of the Universe with unprecedented sensitivity and resolution. The tools available for analyzing Fermi-LAT data are the…

High Energy Astrophysical Phenomena · Physics 2022-06-24 Raniere de Menezes

Compound AI applications, which compose calls to ML models using a general-purpose programming language like Python, are widely used for a variety of user-facing tasks, from software engineering to enterprise automation, making their…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-19 Stephen Mell , David Mell , Konstantinos Kallas , Steve Zdancewic , Osbert Bastani

Clinical decision-making is inherently complex, often influenced by cognitive biases, incomplete information, and case ambiguity. Large Language Models (LLMs) have shown promise as tools for supporting clinical decision-making, yet their…

Machine Learning · Computer Science 2025-07-10 Burcu Sayin , Ipek Baris Schlicht , Ngoc Vo Hong , Sara Allievi , Jacopo Staiano , Pasquale Minervini , Andrea Passerini

The development of ultra-intense laser-based sources of high energy ions is an important goal, with a variety of potential applications. One of the barriers to achieving this goal is the need to maximize the conversion efficiency from laser…

We describe a C++ program that we have written and made available for calculating the evolution of interacting scalar fields in an expanding universe. The program is particularly useful for the study of reheating and thermalization after…

High Energy Physics - Phenomenology · Physics 2010-11-11 Gary Felder , Igor Tkachev

Space-filling experimental design techniques are commonly used in many computer modeling and simulation studies to explore the effects of inputs on outputs. This research presents raxpy, a Python package that leverages expressive annotation…

Mathematical Software · Computer Science 2025-01-08 Neil Ranly , Torrey Wagner

We have developed the first laser damage simulation algorithm capable of determining crater and surface modification morphology from microscopic physics. Rapid progress in the field of high intensity ultrafast lasers has enabled its utility…

Computational Physics · Physics 2017-04-26 A. M. Russell , K. R. P. Kafka , D. W. Schumacher , E. A. Chowdhury

Large-scale modelling of three-dimensional controlled-source electromagnetic (CSEM) surveys used to be feasible only for large companies and research consortia. This has changed over the last few years, and today there exists a selection of…

We present PrismSSL, a Python library that unifies state-of-the-art self-supervised learning (SSL) methods across audio, vision, graphs, and cross-modal settings in a single, modular codebase. The goal of the demo is to show how researchers…

Machine Learning · Computer Science 2025-11-25 Melika Shirian , Kianoosh Vadaei , Kian Majlessi , Audrina Ebrahimi , Arshia Hemmat , Peyman Adibi , Hossein Karshenas

PaPy, which stands for parallel pipelines in Python, is a highly flexible framework that enables the construction of robust, scalable workflows for either generating or processing voluminous datasets. A workflow is created from user-written…

Programming Languages · Computer Science 2014-07-17 Marcin Cieslik , Cameron Mura