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Pulmonary diseases impact millions of lives globally and annually. The recent outbreak of the pandemic of the COVID-19, a novel pulmonary infection, has more than ever brought the attention of the research community to the machine-aided…

Machine Learning · Computer Science 2020-11-30 Morteza Hosseini , Haoran Ren , Hasib-Al Rashid , Arnab Neelim Mazumder , Bharat Prakash , Tinoosh Mohsenin

The interconnection between the human lungs and other organs, such as the liver and kidneys, is crucial for understanding the underlying risks and effects of lung diseases and improving patient care. However, most research chest CT imaging…

Computer Vision and Pattern Recognition · Computer Science 2025-01-23 Lianrui Zuo , Kaiwen Xu , Dingjie Su , Xin Yu , Aravind R. Krishnan , Yihao Liu , Shunxing Bao , Thomas Li , Kim L. Sandler , Fabien Maldonado , Bennett A. Landman

Computational multi-scale pandemic modelling remains a major and timely challenge. Here we identify specific requirements for a new class of models simulating pandemics across three scales: (1) pathogen evolution, often punctuated by the…

Populations and Evolution · Quantitative Biology 2025-08-04 Quang Dang Nguyen , Sheryl L. Chang , Carl J. E. Suster , Rebecca J. Rockett , Vitali Sintchenko , Tania C. Sorrell , Mikhail Prokopenko

Various structures in human physiology follow a treelike morphology, which often expresses complexity at very fine scales. Examples of such structures are intrathoracic airways, retinal blood vessels, and hepatic blood vessels. Large…

Image and Video Processing · Electrical Eng. & Systems 2022-09-23 Hao Li , Zeyu Tang , Yang Nan , Guang Yang

Investigations on airborne transmission of pathogens constitute a rapidly expanding field, primarily focused on understanding the expulsion patterns of respiratory particulates from infected hosts and their dispersion in confined spaces.…

Fluid Dynamics · Physics 2024-03-08 Saikat Basu , Abir Malakar , Mohammad Mehedi Hasan Akash

The outbreak of COVID-19 in 2020 has led to a surge in the interest in the mathematical modeling of infectious diseases. Disease transmission may be modeled as compartmental models, in which the population under study is divided into…

Populations and Evolution · Quantitative Biology 2020-10-27 Malú Grave , Alvaro L. G. A. Coutinho

Despite the progress in medical data collection the actual burden of SARS-CoV-2 remains unknown due to under-ascertainment of cases. This was apparent in the acute phase of the pandemic and the use of reported deaths has been pointed out as…

Applications · Statistics 2023-07-13 Anastasia Chatzilena , Nikolaos Demiris , Konstantinos Kalogeropoulos

The unprecedented outbreak of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2), or COVID-19, continues to be a significant worldwide problem. As a result, a surge of new COVID-19 related research has followed suit. The growing…

Machine Learning · Computer Science 2021-07-21 Maksim E. Eren , Nick Solovyev , Chris Hamer , Renee McDonald , Boian S. Alexandrov , Charles Nicholas

Some of the key questions of interest during the COVID-19 pandemic (and all outbreaks) include: where did the disease start, how is it spreading, who is at risk, and how to control the spread. There are a large number of complex factors…

Populations and Evolution · Quantitative Biology 2020-09-22 Aniruddha Adiga , Jiangzhuo Chen , Madhav Marathe , Henning Mortveit , Srinivasan Venkatramanan , Anil Vullikanti

A plethora of prediction models of SARS-CoV-2 pandemic were proposed in the past. Prediction performances not only depend on the structure and features of the model, but also on its parametrization. Official databases are often biased due…

Populations and Evolution · Quantitative Biology 2021-09-27 Yuri Kheifetz , Holger Kirsten , Markus Scholz

Automated lobar segmentation allows regional evaluation of lung disease and is important for diagnosis and therapy planning. Advanced statistical workflows permitting such evaluation is a needed area within respiratory medicine; their…

Image and Video Processing · Electrical Eng. & Systems 2021-05-12 Marc Boubnovski Martell , Mitchell Chen , Kristofer Linton-Reid , Joram M. Posma , Susan J Copley , Eric O. Aboagye

Among the realistic ingredients to be considered in the computational modeling of infectious diseases, human mobility represents a crucial challenge both on the theoretical side and in view of the limited availability of empirical data. In…

Physics and Society · Physics 2010-02-04 Duygu Balcan , Vittoria Colizza , Bruno Goncalves , Hao Hu , Jose J. Ramasco , Alessandro Vespignani

Respiratory airflow signals provide critical insight into breathing mechanics, yet conventional analysis methods remain limited in their ability to characterize the internal structure of individual breaths. Traditional approaches treat…

Signal Processing · Electrical Eng. & Systems 2026-04-27 Victoria Ribeiro Rodrigues , Paul W. Davenport , Nicholas J. Napoli

The 3D simulation model of the lung was established by using the reconstruction method. A computer aided pulmonary nodule detection model was constructed. The process iterates over the images to refine the lung nodule recognition model…

Image and Video Processing · Electrical Eng. & Systems 2024-06-21 Yutian Yang , Hongjie Qiu , Yulu Gong , Xiaoyi Liu , Yang Lin , Muqing Li

Pulmonary emphysema is traditionally subcategorized into three subtypes, which have distinct radiological appearances on computed tomography (CT) and can help with the diagnosis of chronic obstructive pulmonary disease (COPD). Automated…

Computer Vision and Pattern Recognition · Computer Science 2016-12-07 Jie Yang , Elsa D. Angelini , Benjamin M. Smith , John H. M. Austin , Eric A. Hoffman , David A. Bluemke , R. Graham Barr , Andrew F. Laine

The discovery of SARS-CoV-2, the responsible virus for the Covid-19 epidemic, has sparked a global health concern with many countries affected. Developing models that can interpret the epidemic and give common trend parameters are useful…

Populations and Evolution · Quantitative Biology 2021-09-21 Milad Radiom , Jean-Franccois Berret

The manifestation of symptoms associated with lung diseases can vary in different depths for individual patients, highlighting the significance of 3D information in CT scans for medical image classification. While Vision Transformer has…

Image and Video Processing · Electrical Eng. & Systems 2024-06-28 Zihao Jin , Yingying Fang , Jiahao Huang , Caiwen Xu , Simon Walsh , Guang Yang

Purpose: To develop a radiomics filtering technique for characterizing spatial-encoded regional pulmonary ventilation information on lung CT. Methods: The lung volume was segmented on 46 CT images, and a 3D sliding window kernel was…

Medical Physics · Physics 2023-01-11 Zhenyu Yang , Kyle J Lafata , Xinru Chen , James Bowsher , Yushi Chang , Chunhao Wang , Fang-Fang Yin

Lung ultrasound imaging is reaching growing interest from the scientific community. On one side, thanks to its harmlessness and high descriptive power, this kind of diagnostic imaging has been largely adopted in sensitive applications, like…

Pulmonary emphysema overlaps considerably with chronic obstructive pulmonary disease (COPD), and is traditionally subcategorized into three subtypes previously identified on autopsy. Unsupervised learning of emphysema subtypes on computed…

Computer Vision and Pattern Recognition · Computer Science 2020-07-10 Jie Yang , Elsa D. Angelini , Pallavi P. Balte , Eric A. Hoffman , John H. M. Austin , Benjamin M. Smith , R. Graham Barr , Andrew F. Laine