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We present a general graph-based modeling abstraction for optimization that we call an OptiGraph. Under this abstraction, any optimization problem is treated as a hierarchical hypergraph in which nodes represent optimization subproblems and…

Optimization and Control · Mathematics 2026-05-11 Jordan Jalving , Sungho Shin , Victor M. Zavala

Modelling relationships between entities in real-world systems with a simple graph is a standard approach. However, reality is better embraced as several interdependent subsystems (or layers). Recently the concept of a multilayer network…

Social and Information Networks · Computer Science 2019-02-20 Mohammad Ghoniem , Fintan Mcgee , Guy Melançon , Benoit Otjacques , Bruno Pinaud

Automated lay summarisation (LS) aims to simplify complex technical documents into a more accessible format to non-experts. Existing approaches using pre-trained language models, possibly augmented with external background knowledge, tend…

Computation and Language · Computer Science 2024-02-22 Zheheng Luo , Qianqian Xie , Sophia Ananiadou

Biological systems, from a cell to the human brain, are inherently complex. A powerful representation of such systems, described by an intricate web of relationships across multiple scales, is provided by complex networks. Recently, several…

Quantitative Methods · Quantitative Biology 2018-02-06 M. De Domenico

Providing an abstract representation of natural and human complex structures is a challenging problem. Accounting for the system heterogenous components while allowing for analytical tractability is a difficult balance. Here I introduce…

Physics and Society · Physics 2023-08-21 Alexei Vazquez

Programs are an increasingly popular representation for visual data, exposing compact, interpretable structure that supports manipulation. Visual programs are usually written in domain-specific languages (DSLs). Finding "good" programs,…

Graphics · Computer Science 2023-05-10 R. Kenny Jones , Paul Guerrero , Niloy J. Mitra , Daniel Ritchie

Rule-based reasoning over natural language input arises in domains where decisions must be auditable and justifiable: clinical protocols specify eligibility criteria in prose, evidence rules define admissibility through textual conditions,…

Artificial Intelligence · Computer Science 2026-01-06 Albert Sadowski , Jarosław A. Chudziak

Lateral ventricle (LV) shape analysis holds promise as a biomarker for neurological diseases; however, challenges remain due to substantial shape variability across individuals and segmentation difficulties arising from limited MRI…

Computer Vision and Pattern Recognition · Computer Science 2025-08-22 Wonjung Park , Suhyun Ahn , Jinah Park

We propose an unsupervised method for parsing large 3D scans of real-world scenes with easily-interpretable shapes. This work aims to provide a practical tool for analyzing 3D scenes in the context of aerial surveying and mapping, without…

Computer Vision and Pattern Recognition · Computer Science 2024-03-29 Romain Loiseau , Elliot Vincent , Mathieu Aubry , Loic Landrieu

Recent vision-language model (VLM)-based approaches have achieved impressive results on image vectorization tasks. However, they are typically evaluated on synthetic benchmarks, where clean SVGs are rasterized at high resolution and then…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Tarun Gehlaut , Difan Liu , Charu Bansal , Krutik Malani , Souymodip Chakraborty , Ankit Phogat , Matthew Fisher , Vineet Batra

Biomedical networks (or graphs) are universal descriptors for systems of interacting elements, from molecular interactions and disease co-morbidity to healthcare systems and scientific knowledge. Advances in artificial intelligence,…

Machine Learning · Computer Science 2025-02-07 Michelle M. Li , Kexin Huang , Marinka Zitnik

We show how to convert models of complex systems such as 2D cellular automata into a 3D printed object. Our method takes into account the limitations inherent to 3D printing processes and materials. Our approach automates the greater part…

Physics Education · Physics 2014-12-30 D. S. Reiss , J. J. Price , T. S. Evans

Due to the rapid growth of the World Wide Web, resource discovery becomes an increasing problem. As an answer to the demand for information management, a third generation of World-Wide Web tools will evolve: information gathering and…

Software Engineering · Computer Science 2018-10-31 Robert E. Kent , Christian Neuss

The growing prevalence of visually rich documents, such as webpages and scanned/digital-born documents (images, PDFs, etc.), has led to increased interest in automatic document understanding and information extraction across academia and…

Computation and Language · Computer Science 2024-02-29 Hongshen Xu , Lu Chen , Zihan Zhao , Da Ma , Ruisheng Cao , Zichen Zhu , Kai Yu

Pulmonary diseases rank prominently among the principal causes of death worldwide. Curing them will require, among other things, a better understanding of the complex 3D tree-shaped structures within the pulmonary system, such as airways,…

Computer Vision and Pattern Recognition · Computer Science 2024-10-21 Kangxian Xie , Jiancheng Yang , Donglai Wei , Ziqiao Weng , Pascal Fua

We introduce Artifact-Based Rendering (ABR), a framework of tools, algorithms, and processes that makes it possible to produce real, data-driven 3D scientific visualizations with a visual language derived entirely from colors, lines,…

Information Visualization has been utilized to gain insights from complex data. In recent times, Large Language models (LLMs) have performed very well in many tasks. In this paper, we showcase the capabilities of different popular LLMs to…

Human-Computer Interaction · Computer Science 2025-08-01 Saadiq Rauf Khan , Vinit Chandak , Sougata Mukherjea

In this paper, we present a new workflow for the computer-aided generation of physicalizations, addressing nested configurations in anatomical and biological structures. Physicalizations are an important component of anatomical and…

Graphics · Computer Science 2022-04-26 Marwin Schindler , Thorsten Korpitsch , Renata G. Raidou , Hsiang-Yun Wu

The paper presents a linguistic and computational model aiming at making the morphological structure of the lexicon emerge from the formal and semantic regularities of the words it contains. The model is word-based. The proposed…

Computation and Language · Computer Science 2009-05-12 Nabil Hathout

Research in cell biology is steadily contributing new knowledge about many different aspects of physiological processes like polymerization, both with respect to the involved molecular structures as well as their related function.…

Human-Computer Interaction · Computer Science 2014-07-15 Ivan Kolesar , Julius Parulek , Ivan Viola , Stefan Bruckner , Anne-Kristin Stavrum , Helwig Hauser
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