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The retrieval model is an indispensable component for real-world knowledge-intensive tasks, e.g., open-domain question answering (ODQA). As separate retrieval skills are annotated for different datasets, recent work focuses on customized…

Computation and Language · Computer Science 2023-05-29 Kaixin Ma , Hao Cheng , Yu Zhang , Xiaodong Liu , Eric Nyberg , Jianfeng Gao

One promising approach to dealing with datapoints that are outside of the initial training distribution (OOD) is to create new classes that capture similarities in the datapoints previously rejected as uncategorizable. Systems that generate…

Machine Learning · Computer Science 2020-02-25 Jeremy Nixon , Jeremiah Liu , David Berthelot

Masked diffusion models have emerged as a powerful framework for text and multimodal generation. However, their sampling procedure updates multiple tokens simultaneously and treats generated tokens as immutable, which may lead to error…

When evaluating the performance of a pre-trained model transferred to a downstream task, it is imperative to assess not only the in-distribution (ID) accuracy of the downstream model but also its capacity to generalize and identify…

Machine Learning · Computer Science 2024-04-02 Andrew Geng , Pin-Yu Chen

For a theoretical understanding of the reactivity of complex chemical systems, relative energies of stationary points on potential energy hypersurfaces need to be calculated to high accuracy. Due to the large number of intermediates present…

Chemical Physics · Physics 2018-10-30 Gregor N. Simm , Markus Reiher

Living systems produce "persistent" copies of information-carrying polymers, in which template and copy sequences remain correlated after physically decoupling. We identify a general measure of the thermodynamic efficiency with which these…

Statistical Mechanics · Physics 2022-06-08 Jenny Poulton , Pieter Rein ten Wolde , Thomas E Ouldridge

The reliability of supervised classifiers is severely hampered by their limitations in dealing with unexpected inputs, leading to great interest in out-of-distribution (OOD) detection. Recently, OOD detectors trained on synthetic outliers,…

Computer Vision and Pattern Recognition · Computer Science 2024-11-22 Lars Doorenbos , Raphael Sznitman , Pablo Márquez-Neila

Identifying minimum-energy paths (MEPs) is crucial for understanding chemical reaction mechanisms but remains computationally demanding. We introduce MEPIN, a scalable machine-learning method for efficiently predicting MEPs from reactant…

Chemical Physics · Physics 2026-02-18 Juno Nam , Miguel Steiner , Max Misterka , Soojung Yang , Avni Singhal , Rafael Gómez-Bombarelli

We extend our assessment of the potential of perturbative coupled cluster (CC) expansions for a test set of open-shell atoms and organic radicals to the description of quadruple excitations. Namely, the second- through sixth-order models of…

Chemical Physics · Physics 2016-05-17 Janus J. Eriksen , Devin A. Matthews , Poul Jørgensen , Jürgen Gauss

Neural networks that are trained on limited category samples often mispredict out-of-distribution (OOD) objects. We observe that features of the same category are more tightly clustered in feature space, while those of different categories…

Computer Vision and Pattern Recognition · Computer Science 2025-01-29 Junkun Chen , Jilin Mei , Liang Chen , Fangzhou Zhao , Yan Xing , Yu Hu

Existing techniques for training language models can be misaligned with the truth: if we train models with imitation learning, they may reproduce errors that humans make; if we train them to generate text that humans rate highly, they may…

Computation and Language · Computer Science 2024-03-05 Collin Burns , Haotian Ye , Dan Klein , Jacob Steinhardt

Predicting transcriptional responses to novel drugs provides a unique opportunity to accelerate biomedical research and advance drug discovery efforts. However, the inherent complexity and high dimensionality of cellular responses, combined…

A straightforward pipeline for zero-shot out-of-distribution (OOD) detection involves selecting potential OOD labels from an extensive semantic pool and then leveraging a pre-trained vision-language model to perform classification on both…

Computer Vision and Pattern Recognition · Computer Science 2024-10-14 Mengyuan Chen , Junyu Gao , Changsheng Xu

Counterfactually-Augmented Data (CAD) has the potential to improve language models' Out-Of-Distribution (OOD) generalization capability, as CAD induces language models to exploit causal features and exclude spurious correlations. However,…

Computation and Language · Computer Science 2023-02-21 Caoyun Fan , Wenqing Chen , Jidong Tian , Yitian Li , Hao He , Yaohui Jin

The recently introduced method of excess collisions (MEC) is modified to estimate diffusion-controlled reaction times inside systems of arbitrary size. The resulting MEC-E equations contain a set of empirical parameters, which have to be…

Biological Physics · Physics 2009-11-11 Holger Merlitz , Konstantin V. Klenin , Chen-Xu Wu , Jörg Langowski

Machine-learned interatomic potentials (MILPs) are rapidly gaining interest for molecular modeling, as they provide a balance between quantum-mechanical level descriptions of atomic interactions and reasonable computational efficiency.…

Computational Physics · Physics 2024-08-30 Gustavo R. Pérez-Lemus , Yinan Xu , Yezhi Jin , Pablo F. Zubieta Rico , Juan J. de Pablo

Predictions of nuclear properties far from measured data are inherently imprecise because of uncertainties in our knowledge of nuclear forces and in our treatment of quantum many-body effects in strongly-interacting systems. While the model…

Nuclear Theory · Physics 2022-09-14 Rodrigo Navarro Perez , Nicolas Schunck

A significant challenge in wet lab experiments with current drug design generative models is the trade-off between pharmacological properties and synthesizability. Molecules predicted to have highly desirable properties are often difficult…

Machine Learning · Computer Science 2025-04-04 Songtao Liu , Dandan Zhang , Zhengkai Tu , Hanjun Dai , Peng Liu

Machine learning models have emerged as a very effective strategy to sidestep time-consuming electronic-structure calculations, enabling accurate simulations of greater size, time scale and complexity. Given the interpolative nature of…

Organic synthesis stands as a cornerstone of the chemical industry. The development of robust machine learning models to support tasks associated with organic reactions is of significant interest. However, current methods rely on…

Machine Learning · Computer Science 2025-01-06 Kaipeng Zeng , Xianbin Liu , Yu Zhang , Xiaokang Yang , Yaohui Jin , Yanyan Xu