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ICD Coding aims to assign a wide range of medical codes to a medical text document, which is a popular and challenging task in the healthcare domain. To alleviate the problems of long-tail distribution and the lack of annotations of…

Computation and Language · Computer Science 2025-05-27 Xu Zhang , Kun Zhang , Wenxin Ma , Rongsheng Wang , Chenxu Wu , Yingtai Li , S. Kevin Zhou

Background: Encouraged by the success of pretrained Transformer models in many natural language processing tasks, their use for International Classification of Diseases (ICD) coding tasks is now actively being explored. In this study, we…

Computation and Language · Computer Science 2023-09-13 Leibo Liu , Oscar Perez-Concha , Anthony Nguyen , Vicki Bennett , Louisa Jorm

Deep representation learning is a subfield of machine learning that focuses on learning meaningful and useful representations of data through deep neural networks. However, existing methods for semantic classification typically employ…

Computer Vision and Pattern Recognition · Computer Science 2024-08-30 Kangjun Liu , Ke Chen , Kui Jia , Yaowei Wang

Although connectionist temporal classification (CTC) has the label context independence assumption, it can still implicitly learn a context-dependent internal language model (ILM) due to modern powerful encoders. In this work, we…

Sound · Computer Science 2025-06-09 Zijian Yang , Minh-Nghia Phan , Ralf Schlüter , Hermann Ney

As model context lengths continue to increase, the number of demonstrations that can be provided in-context approaches the size of entire training datasets. We study the behavior of in-context learning (ICL) at this extreme scale on…

Computation and Language · Computer Science 2025-03-05 Amanda Bertsch , Maor Ivgi , Emily Xiao , Uri Alon , Jonathan Berant , Matthew R. Gormley , Graham Neubig

Prediction of medical codes from clinical notes is both a practical and essential need for every healthcare delivery organization within current medical systems. Automating annotation will save significant time and excessive effort spent by…

Computation and Language · Computer Science 2021-07-23 Byung-Hak Kim , Varun Ganapathi

The visual dialog task requires an AI agent to interact with humans in multi-round dialogs based on a visual environment. As a common linguistic phenomenon, pronouns are often used in dialogs to improve the communication efficiency. As a…

Computation and Language · Computer Science 2022-05-31 Xintong Yu , Hongming Zhang , Ruixin Hong , Yangqiu Song , Changshui Zhang

We study the problem of causal effect identification from observational distribution given the causal graph and some context-specific independence (CSI) relations. It was recently shown that this problem is NP-hard, and while a sound…

Machine Learning · Computer Science 2022-02-18 Ehsan Mokhtarian , Fateme Jamshidi , Jalal Etesami , Negar Kiyavash

Patent classification aims to assign multiple International Patent Classification (IPC) codes to a given patent. Recent methods for automatically classifying patents mainly focus on analyzing the text descriptions of patents. However, apart…

Artificial Intelligence · Computer Science 2024-06-21 Tao Zou , Le Yu , Junchen Ye , Leilei Sun , Bowen Du , Deqing Wang

While cognitive diagnosis (CD) effectively assesses students' knowledge mastery from structured test data, applying it to real-world teacher-student dialogues presents two fundamental challenges. Traditional CD models lack a suitable…

Computation and Language · Computer Science 2025-10-15 Rui Jia , Yuang Wei , Ruijia Li , Yuan-Hao Jiang , Xinyu Xie , Yaomin Shen , Min Zhang , Bo Jiang

Clinical reasoning agents based on large language models (LLMs) aim to automate tasks such as intensive care unit (ICU) monitoring and patient state tracking from electronic health records (EHRs). Existing systems typically rely on manually…

Artificial Intelligence · Computer Science 2026-05-12 Timothy Ossowski , Xinchi Liu , Danyal Maqbool , Vaibhav Dhanuka , Sheng Zhang , Hoifung Poon , Majid Afshar , Tyler Bradshaw , Junjie Hu

Medical code assignment from clinical text is a fundamental task in clinical information system management. As medical notes are typically lengthy and the medical coding system's code space is large, this task is a long-standing challenge.…

Computation and Language · Computer Science 2022-03-16 Shaoxiong Ji , Shirui Pan , Pekka Marttinen

Background: Modern Code Review (MCR) is a key component for delivering high-quality software and sharing knowledge among developers. Effective reviews require an in-depth understanding of the code and demand from the reviewers to…

Software Engineering · Computer Science 2024-02-16 Michael Unterkalmsteiner , Deepika Badampudi , Ricardo Britto , Nauman bin Ali

Neural coreference resolution models trained on one dataset may not transfer to new, low-resource domains. Active learning mitigates this problem by sampling a small subset of data for annotators to label. While active learning is…

Computation and Language · Computer Science 2022-03-30 Michelle Yuan , Patrick Xia , Chandler May , Benjamin Van Durme , Jordan Boyd-Graber

Prediction of medical codes from clinical notes is a practical and essential need for every healthcare delivery organization within current medical systems. Automating annotation will save significant time and excessive effort that human…

Machine Learning · Computer Science 2022-11-01 Byung-Hak Kim

The standardization of clinical data elements (CDEs) aims to ensure consistent and comprehensive patient information across various healthcare systems. Existing methods often falter when standardizing CDEs of varying representation and…

Information Retrieval · Computer Science 2025-05-08 Komal Gilani , Marlo Verket , Christof Peters , Michel Dumontier , Hans-Peter Brunner-La Rocca , Visara Urovi

Abbreviation disambiguation is important for automated clinical note processing due to the frequent use of abbreviations in clinical settings. Current models for automated abbreviation disambiguation are restricted by the scarcity and…

Machine Learning · Computer Science 2019-12-16 Marta Skreta , Aryan Arbabi , Jixuan Wang , Michael Brudno

Biological relation networks contain rich information for understanding the biological mechanisms behind the relationship of entities such as genes, proteins, diseases, and chemicals. The vast growth of biomedical literature poses…

Computation and Language · Computer Science 2025-01-27 Po-Ting Lai , Chih-Hsuan Wei , Shubo Tian , Robert Leaman , Zhiyong Lu

Accurate medical symptom coding from unstructured clinical text, such as vaccine safety reports, is a critical task with applications in pharmacovigilance and safety monitoring. Symptom coding, as tailored in this study, involves…

Computation and Language · Computer Science 2025-04-07 Chengyang He , Wenlong Zhang , Violet Xinying Chen , Yue Ning , Ping Wang

Large, publicly available clinical datasets have emerged as a novel resource for understanding disease heterogeneity and to explore personalization of therapy. These datasets are derived from data not originally collected for research…

Machine Learning · Computer Science 2025-08-14 Anish Narain , Ritam Majumdar , Nikita Narayanan , Dominic Marshall , Sonali Parbhoo