Related papers: Revisiting the Second Vassiliev (In)variant for Po…
We give a new construction of the one-variable Alexander polynomial of an oriented knot or link, and show that it generalizes to a vector valued invariant of oriented tangles.
Twisted Alexander invariants of knots are well-defined up to multiplication of units. We get rid of this multiplicative ambiguity via a combinatorial method and define normalized twisted Alexander invariants. We then show that the…
In this work the thermodynamic properties of short polymer knots (up to 120 segments) defined on a simple cubic lattice are studied with the help of the Wang-Landau Monte Carlo algorithm. The sampling process is performed using pivot…
Long, flexible physical filaments are naturally tangled and knotted, from macroscopic string down to long-chain molecules. The existence of knotting in a filament naturally affects its configuration and properties, and may be very stable or…
This paper describes a polynomial invariant of virtual knots that is defined in terms of an integer labeling of the virtual knot diagram. This labeling is seen to derive from an essentially unique structure of affine flat biquandle for flat…
We review quantum field theory approach to the knot theory. Using holomorphic gauge we obtain the Kontsevich integral. It is explained how to calculate Vassiliev invariants and coefficients in Kontsevich integral in a combinatorial way…
Building further on work of Marin and Wagner, we give a cubic braid-type skein theory of the Links--Gould polynomial invariant of oriented links and prove that it can be used to evaluate any oriented link, adding this polynomial to the list…
A Gauss diagram is a simple, combinatorial way to present a link. It is known that any Vassiliev invariant may be obtained from a Gauss diagram formula that involves counting subdiagrams of certain combinatorial types. In this paper we…
This paper introduces two virtual knot theory ``analogues'' of a well-known family of invariants for knots in thickened surfaces: the Grishanov-Vassiliev finite-type invariants of order two. The first, called the three loop isotopy…
Using a lattice model of polymers in a tube, we define one way to characterise different configurations of a given knot as either "local" or "non-local" and, for several ring polymer models, we provide both theoretical and numerical…
The $n$-loop Kontsevich invariant of knots takes its value in the completion of the space of $n$-loop open Jacobi diagrams, which is an infinite dimensional vector space. Since the 1-loop part is presented by the Alexander polynomial, we…
Knots, links and entangled filaments appear in many physical systems of interest in biology and engineering. Classifying knots and measuring entanglement is of interest both for advancing knot theory, as well as for analyzing large data…
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
In this manuscript we introduce a method to measure entanglement of curves in 3-space that extends the notion of knot and link polynomials to open curves. We define the bracket polynomial of curves in 3-space and show that it has real…
Twisted Alexander invariants have been defined for any knot and linear representation of its group. The invariants are generalized for any periodic representation of the commutator subgroup of the knot group. Properties of the new twisted…
The statistical mechanics of a long knotted collapsed polymer is determined by a free-energy with a knot-dependent subleading term, which is linked to the length of the shortest polymer that can hold such knot. The only other parameter…
The best known examples of Vassiliev invariants are the coefficients of a Jones-type polynomial expanded after exponential substitution. We show that for a given knot, the first $N$ Vassiliev invariants in this family determine the rest for…
The interplay between the topological and geometrical properties of a polymer ring can be clarified by establishing the entanglement trapped in any portion (arc) of the ring. The task requires to close the open arcs into a ring, and the…
Simulated configurations of flexible knotted rings confined inside a spherical cavity are fed into long-short term memory neural networks (LSTM NNs) designed to distinguish knot types. The results show that they perform well in knot…
Numerical studies of the average size of trivially knotted polymer loops with no excluded volume are undertaken. Topology is identified by Alexander and Vassiliev degree 2 invariants. Probability of a trivial knot, average gyration radius,…