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Introduction: Big data in healthcare must be exploited to achieve a substantial increase in efficiency and competitiveness. Especially the analysis of patient-related data possesses huge potential to improve decision-making processes.…

Electronic Health Records (EHRs) often lack explicit links between medications and diagnoses, making clinical decision-making and research more difficult. Even when links exist, diagnosis lists may be incomplete, especially during early…

Computation and Language · Computer Science 2025-03-31 Dina Albassam , Adam Cross , Chengxiang Zhai

Deep-learning-based clinical decision support using structured electronic health records (EHR) has been an active research area for predicting risks of mortality and diseases. Meanwhile, large amounts of narrative clinical notes provide…

Computation and Language · Computer Science 2023-05-10 Weimin Lyu , Xinyu Dong , Rachel Wong , Songzhu Zheng , Kayley Abell-Hart , Fusheng Wang , Chao Chen

The project aimed to define the rules and develop a technological solution to automatically identify a set of attributes within free-text clinical records written in Portuguese. The first application developed and implemented on this basis…

With the abundance of data and information in todays time, it is nearly impossible for man, or, even machine, to go through all of the data line by line. What one usually does is to try to skim through the lines and retain the absolutely…

Computation and Language · Computer Science 2024-02-09 Imaad Zaffar Khan , Amaan Aijaz Sheikh , Utkarsh Sinha

Early prediction of mortality and length of stay(LOS) of a patient is vital for saving a patient's life and management of hospital resources. Availability of electronic health records(EHR) makes a huge impact on the healthcare domain and…

Machine Learning · Computer Science 2020-12-01 Batuhan Bardak , Mehmet Tan

Objective: Narrative text in Electronic health records (EHR) contain rich information for medical and data science studies. This paper introduces the design and performance of Narrative Information Linear Extraction (NILE), a natural…

Computation and Language · Computer Science 2019-07-17 Sheng Yu , Tianrun Cai , Tianxi Cai

Accessing medical literature is difficult for laypeople as the content is written for specialists and contains medical jargon. Automated text simplification methods offer a potential means to address this issue. In this work, we propose a…

Computation and Language · Computer Science 2023-02-14 Junru Lu , Jiazheng Li , Byron C. Wallace , Yulan He , Gabriele Pergola

Information extraction from narrative clinical notes is useful for patient care, as well as for secondary use of medical data, for research or clinical purposes. Many studies focused on information extraction from English clinical texts,…

Computation and Language · Computer Science 2021-04-05 Emma Chiaramello , Francesco Pinciroli , Alberico Bonalumi , Angelo Caroli , Gabriella Tognola

Clinical trials offer a fundamental opportunity to discover new treatments and advance the medical knowledge. However, the uncertainty of the outcome of a trial can lead to unforeseen costs and setbacks. In this study, we propose a new…

Computation and Language · Computer Science 2022-04-04 Georgios Katsimpras , Georgios Paliouras

Many computational linguistic methods have been proposed to study the information content of languages. We consider two interesting research questions: 1) how is information distributed over long documents, and 2) how does content…

Computation and Language · Computer Science 2023-09-13 Shaoxiong Ji , Wei Sun , Pekka Marttinen

In the dynamic hospital setting, decision support can be a valuable tool for improving patient outcomes. Data-driven inference of future outcomes is challenging in this dynamic setting, where long sequences such as laboratory tests and…

Quantitative Methods · Quantitative Biology 2024-04-25 Alan D. Kaplan , Priyadip Ray , John D. Greene , Vincent X. Liu

Foundational models such as the Segment Anything Model (SAM) are gaining traction in medical imaging segmentation, supporting multiple downstream tasks. However, such models are supervised in nature, still relying on large annotated…

Computer Vision and Pattern Recognition · Computer Science 2025-03-07 Aishik Konwer , Zhijian Yang , Erhan Bas , Cao Xiao , Prateek Prasanna , Parminder Bhatia , Taha Kass-Hout

This paper describes our submission to the MEDIQA-Chat 2023 shared task for automatic clinical note generation from doctor-patient conversations. We report results for two approaches: the first fine-tunes a pre-trained language model (PLM)…

Computation and Language · Computer Science 2023-06-06 John Giorgi , Augustin Toma , Ronald Xie , Sondra S. Chen , Kevin R. An , Grace X. Zheng , Bo Wang

Post-discharge care management coordinates patients' referrals to improve their health after being discharged from hospitals, especially elderly and chronically ill patients. In a care management setting, health referrals are processed by a…

Machine Learning · Computer Science 2022-06-28 Mohammed Mahyoub

In recent years extracting relevant information from biomedical and clinical texts such as research articles, discharge summaries, or electronic health records have been a subject of many research efforts and shared challenges. Relation…

Computation and Language · Computer Science 2016-07-01 Sunil Kumar Sahu , Ashish Anand , Krishnadev Oruganty , Mahanandeeshwar Gattu

Effective representation learning of electronic health records is a challenging task and is becoming more important as the availability of such data is becoming pervasive. The data contained in these records are irregular and contain…

Machine Learning · Computer Science 2020-05-05 Sajad Darabi , Mohammad Kachuee , Shayan Fazeli , Majid Sarrafzadeh

Nursing documentation in intensive care units (ICUs) provides essential clinical intelligence but often suffers from inconsistent terminology, informal styles, and lack of standardization, challenges that are particularly critical in heart…

Computation and Language · Computer Science 2025-10-08 Junyi Fan , Li Sun , Negin Ashrafi , Kamiar Alaei , Maryam Pishgar

In this paper, we present our approach to extracting structured information from unstructured Electronic Health Records (EHR) [2] which can be used to, for example, study adverse drug reactions in patients due to chemicals in their…

Computation and Language · Computer Science 2020-01-30 Amogh Kamat Tarcar , Aashis Tiwari , Vineet Naique Dhaimodker , Penjo Rebelo , Rahul Desai , Dattaraj Rao

Summarizing patient clinical notes is vital for reducing documentation burdens. Current manual summarization makes medical staff struggle. We propose an automatic method using LLMs, but long inputs cause LLMs to lose context, reducing…

Artificial Intelligence · Computer Science 2024-11-15 Guoqing Zhang , Keita Fukuyama , Kazumasa Kishimoto , Tomohiro Kuroda