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Clinical concept extraction often begins with clinical Named Entity Recognition (NER). Often trained on annotated clinical notes, clinical NER models tend to struggle with tagging clinical entities in user queries because of the structural…

Information Retrieval · Computer Science 2019-12-25 Yue Zhao , John Handley

Unstructured information comprises a valuable source of data in clinical records. For text mining in clinical records, concept extraction is the first step in finding assertions and relationships. This study presents a system developed for…

Information Retrieval · Computer Science 2010-12-09 Ning Kang , Rogier Barendse , Zubair Afzal , Bharat Singh , Martijn J. Schuemie , Erik M. van Mulligen , Jan A. Kors

The field of healthcare has increasingly turned its focus towards Large Language Models (LLMs) due to their remarkable performance. However, their performance in actual clinical applications has been underexplored. Traditional evaluations…

Traditional approaches to extractive summarization rely heavily on human-engineered features. In this work we propose a data-driven approach based on neural networks and continuous sentence features. We develop a general framework for…

Computation and Language · Computer Science 2016-07-04 Jianpeng Cheng , Mirella Lapata

Manual chart review remains an extremely time-consuming and resource-intensive component of clinical research, requiring experts to extract often complex information from unstructured electronic health record (EHR) narratives. We present a…

Identifying user preferences in dialogue systems is a pivotal aspect of providing satisfying services. Current research shows that using large language models (LLMs) to fine-tune a task-specific preference extractor yields excellent results…

Computation and Language · Computer Science 2025-08-05 Cheng Wang , ziru Liu , Pengcheng Tang , Mingyu Zhang , Quanyu Dai , Yue Zhu

Scalable and accurate identification of specific clinical outcomes has been enabled by machine-learning applied to electronic medical record (EMR) systems. The development of classification models requires the collection of a complete…

Methodology · Statistics 2020-11-09 W. Katherine Tan , Patrick J. Heagerty

Demographics, Social determinants of health, and family history documented in the unstructured text within the electronic health records are increasingly being studied to understand how this information can be utilized with the structured…

Computation and Language · Computer Science 2023-09-15 Neel Bhate , Ansh Mittal , Zhe He , Xiao Luo

Unplanned intensive care unit (ICU) readmission rate is an important metric for evaluating the quality of hospital care. Efficient and accurate prediction of ICU readmission risk can not only help prevent patients from inappropriate…

Computation and Language · Computer Science 2022-01-10 Qiuhao Lu , Thien Huu Nguyen , Dejing Dou

Recent rapid increase in the generation of clinical data and rapid development of computational science make us able to extract new insights from massive datasets in healthcare industry. Oncological clinical notes are creating rich…

Artificial Intelligence · Computer Science 2018-09-24 Marjan Najafabadipour , Juan Manuel Tuñas , Alejandro Rodríguez-González , Ernestina Menasalvas

Exploration and analysis of potential data sources is a significant challenge in the application of NLP techniques to novel information domains. We describe HARE, a system for highlighting relevant information in document collections to…

Computation and Language · Computer Science 2019-08-30 Denis Newman-Griffis , Eric Fosler-Lussier

Whereas it has become easier for individuals to track their personal health data (e.g., heart rate, step count, food log), there is still a wide chasm between the collection of data and the generation of meaningful explanations to help…

Computation and Language · Computer Science 2021-03-11 Jonathan J. Harris , Ching-Hua Chen , Mohammed J. Zaki

Both medical care and observational studies in oncology require a thorough understanding of a patient's disease progression and treatment history, often elaborately documented in clinical notes. Despite their vital role, no current oncology…

Computation and Language · Computer Science 2024-03-18 Madhumita Sushil , Vanessa E. Kennedy , Divneet Mandair , Brenda Y. Miao , Travis Zack , Atul J. Butte

In-hospital mortality (IHM) prediction for ICU patients is critical for timely interventions and efficient resource allocation. While structured physiological data provides quantitative insights, clinical notes offer unstructured,…

Computation and Language · Computer Science 2024-11-27 Harshavardhan Battula , Jiacheng Liu , Jaideep Srivastava

Problem Definition: Managing inpatient flow in large hospital systems is challenging due to the complexity of assigning randomly arriving patients -- either waiting for primary units or being overflowed to alternative units. Current…

Optimization and Control · Mathematics 2026-05-08 Jingjing Sun , Jim Dai , Pengyi Shi

Efficient communication between patients and clinicians plays an important role in shared decision-making. However, clinical reports are often lengthy and filled with clinical jargon, making it difficult for domain experts to identify…

Computation and Language · Computer Science 2025-09-10 Libo Ren , Yee Man Ng , Lifeng Han

We propose a data-to-text generation model with two modules, one for tracking and the other for text generation. Our tracking module selects and keeps track of salient information and memorizes which record has been mentioned. Our…

Computation and Language · Computer Science 2021-04-05 Hayate Iso , Yui Uehara , Tatsuya Ishigaki , Hiroshi Noji , Eiji Aramaki , Ichiro Kobayashi , Yusuke Miyao , Naoaki Okazaki , Hiroya Takamura

Primary care professionals struggle to keep up to date with the latest scientific literature critical in guiding evidence-based practice related to their daily work. To help solve the above-mentioned problem, we employed generative…

Computation and Language · Computer Science 2023-08-01 Gregor Stiglic , Leon Kopitar , Lucija Gosak , Primoz Kocbek , Zhe He , Prithwish Chakraborty , Pablo Meyer , Jiang Bian

Healthcare organizations are in a continuous effort to improve health outcomes, reduce costs and enhance patient experience of care. Data is essential to measure and help achieving these improvements in healthcare delivery. Consequently, a…

Computation and Language · Computer Science 2018-08-13 Steffen Pauws , Albert Gatt , Emiel Krahmer , Ehud Reiter

This paper presents our contribution to the MEDIQA-2023 Dialogue2Note shared task, encompassing both subtask A and subtask B. We approach the task as a dialogue summarization problem and implement two distinct pipelines: (a) a fine-tuning…

Computation and Language · Computer Science 2023-05-10 Xiangru Tang , Andrew Tran , Jeffrey Tan , Mark Gerstein
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