Related papers: Using quantum annealing to design lattice proteins
Resource allocation of wide-area internet networks is inherently a combinatorial optimization problem that if solved quickly, could provide near real-time adaptive control of internet-protocol traffic ensuring increased network efficacy and…
With the emergence of quantum computers, a new field of algorithmic music composition has been initiated. The vast majority of previous work focuses on music generation using gate-based quantum computers. An alternative model of computation…
This study addresses the minor-embedding problem, which involves mapping the variables of an Ising model onto a quantum annealing processor. The primary motivation stems from the observed performance disparity of quantum annealers when…
Quantum annealing may provide advantages over simulated annealing on solving some problems such as Kth order binary optimization problem. No feasible architecture exists to implement the high-order optimization problem (K > 2) on current…
This tutorial offers a quick, hands-on introduction to solving Quadratic Unconstrained Binary Optimization (QUBO) models on currently available quantum computers and their simulators. We cover both IBM and D-Wave machines: IBM utilizes a…
We explore the applicability of quantum annealing to the approximation task of curve fitting. To this end, we consider a function that shall approximate a given set of data points and is written as a finite linear combination of…
Quantum annealing targets low-energy solutions of Ising/QUBO problems, but reliable assessment requires more than best-energy comparisons. This dissertation develops a benchmarking framework for D-Wave quantum annealers that combines strong…
Quantum chemistry is regarded to be one of the first disciplines that will be revolutionized by quantum computing. Although universal quantum computers of practical scale may be years away, various approaches are currently being pursued to…
A quantum annealer exploits quantum effects to solve a particular type of optimization problem. The advantage of this specialized hardware is that it effectively considers all possible solutions in parallel, thereby potentially…
High entropy alloys (HEAs) offer unprecedented compositional flexibility for designing advanced materials, yet predicting their crystallographic phases remains a key bottleneck due to limited data and complex phase formation behavior. Here,…
Principal component analysis is commonly used for dimensionality reduction, feature extraction, denoising, and visualization. The most commonly used principal component analysis method is based upon optimization of the L2-norm, however, the…
Deep learning models are used in critical applications, in which mistakes can have serious consequences. Therefore, it is crucial to understand how and why models generate predictions. This understanding provides useful information to check…
I present a novel use of quantum annealing to solve the Set Splitting Problem using (QUBO) problem formulation. The contribution of the work is in formulating penalty functions that ensure the ground state of the QUBO Hamiltonian…
In this study, we propose an analytic statistical mechanics approach to solve a fundamental problem in biological physics called protein design. Protein design is an inverse problem of protein structure prediction, and its solution is the…
Ising machines have the potential to realize fast and highly accurate solvers for combinatorial optimization problems. They are classified based on their internal algorithms. Examples include simulated-annealing-based Ising machines…
Quantum chemistry calculations for small molecules on quantum hardware have been demonstrated to date only on universal-gate quantum computers, not quantum annealers. The latter devices are limited to finding the lowest eigenstate of the…
This paper presents a two-phase protein folding optimization on a three-dimensional AB off-lattice model. The first phase is responsible for forming conformations with a good hydrophobic core or a set of compact hydrophobic amino acid…
We study the protein folding problem on the base of the quantum approach we proposed recently by considering the model of protein chain with nine amino-acid residues. We introduced the concept of distance space and its projections on a…
Polynomial systems over the binary field have important applications, especially in symmetric and asymmetric cryptanalysis, multivariate-based post-quantum cryptography, coding theory, and computer algebra. In this work, we study the…
Boltzmann machine is a powerful machine learning model with many real-world applications, for example by constructing deep belief networks. Statistical inference on a Boltzmann machine can be carried out by sampling from its posterior…