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-Background. Network neuroscience examines the brain as a complex system represented by a network (or connectome), providing deeper insights into the brain morphology and function, allowing the identification of atypical brain connectivity…

Neurons and Cognition · Quantitative Biology 2020-09-01 Mert Lostar , Islem Rekik

Link-prediction is an active research field within network theory, aiming at uncovering missing connections or predicting the emergence of future relationships from the observed network structure. This paper represents our contribution to…

Physics and Society · Physics 2018-07-20 Federica Parisi , Guido Caldarelli , Tiziano Squartini

Link Prediction is a foundational task in Graph Representation Learning, supporting applications like link recommendation, knowledge graph completion and graph generation. Graph Neural Networks have shown the most promising results in this…

Machine Learning · Computer Science 2026-02-26 Claudio Moroni , Claudio Borile , Carolina Mattsson , Michele Starnini , André Panisson

Knowledge graph embeddings rank among the most successful methods for link prediction in knowledge graphs, i.e., the task of completing an incomplete collection of relational facts. A downside of these models is their strong sensitivity to…

Machine Learning · Statistics 2019-07-03 Robert Bamler , Farnood Salehi , Stephan Mandt

Most statistical models for networks focus on pairwise interactions between nodes. However, many real-world networks involve higher-order interactions among multiple nodes, such as co-authors collaborating on a paper. Hypergraphs provide a…

Methodology · Statistics 2025-09-16 Yichao Chen , Jingfei Zhang , Ji Zhu

Large Language Models have emerged as a promising approach for graph learning due to their powerful reasoning capabilities. However, existing methods exhibit systematic performance degradation on structurally important nodes such as bridges…

Graphs with abundant attributes are essential in modeling interconnected entities and enhancing predictions across various real-world applications. Traditional Graph Neural Networks (GNNs) often require re-training for different graph tasks…

Computation and Language · Computer Science 2026-05-26 Yanchao Tan , Hang Lv , Pengxiang Zhan , Shiping Wang , Carl Yang

Pretraining plays a pivotal role in acquiring generalized knowledge from large-scale data, achieving remarkable successes as evidenced by large models in CV and NLP. However, progress in the graph domain remains limited due to fundamental…

Artificial Intelligence · Computer Science 2024-06-21 Yu Song , Haitao Mao , Jiachen Xiao , Jingzhe Liu , Zhikai Chen , Wei Jin , Carl Yang , Jiliang Tang , Hui Liu

In document classification, graph-based models effectively capture document structure, overcoming sequence length limitations and enhancing contextual understanding. However, most existing graph document representations rely on heuristics,…

Computation and Language · Computer Science 2025-08-05 Margarita Bugueño , Gerard de Melo

Link prediction is an important task in addressing the incompleteness problem of knowledge graphs (KG). Previous link prediction models suffer from issues related to either performance or explanatory capability. Furthermore, models that are…

Computation and Language · Computer Science 2023-10-24 Mohammad Hossein Khojasteh , Najmeh Torabian , Ali Farjami , Saeid Hosseini , Behrouz Minaei-Bidgoli

Within network analysis, the analytical maximum entropy framework has been very successful for different tasks as network reconstruction and filtering. In a recent paper, the same framework was used for link-prediction for monopartite…

Foundation models like ChatGPT and GPT-4 have revolutionized artificial intelligence, exhibiting remarkable abilities to generalize across a wide array of tasks and applications beyond their initial training objectives. However, graph…

Machine Learning · Computer Science 2025-01-22 Yufei He , Yuan Sui , Xiaoxin He , Bryan Hooi

Conventional hypernetworks are typically engineered around a specific base-model parameterization, so changing the target architecture often entails redesigning the hypernetwork and retraining it from scratch. We introduce the…

Machine Learning · Computer Science 2026-04-03 Xuanfeng Zhou

The complete characterization of enzymatic activities between molecules remains incomplete, hindering biological engineering and limiting biological discovery. We develop in this work a technique, Enzymatic Link Prediction (ELP), for…

Molecular Networks · Quantitative Biology 2020-02-11 Julie Jiang , Li-Ping Liu , Soha Hassoun

A link prediction (LP) algorithm is given a graph, and has to rank, for each node, other nodes that are candidates for new linkage. LP is strongly motivated by social search and recommendation applications. LP techniques often focus on…

Machine Learning · Computer Science 2013-10-18 Abir De , Niloy Ganguly , Soumen Chakrabarti

Inductive logic reasoning is a fundamental task in graph analysis, which aims to generalize patterns from data. This task has been extensively studied for traditional graph representations, such as knowledge graphs (KGs), using techniques…

Machine Learning · Computer Science 2024-05-07 Yuan Yang , Siheng Xiong , Ali Payani , James C Kerce , Faramarz Fekri

We consider the link prediction problem in a partially observed network, where the objective is to make predictions in the unobserved portion of the network. Many existing methods reduce link prediction to binary classification problem.…

Machine Learning · Statistics 2016-02-23 Bopeng Li , Sougata Chaudhuri , Ambuj Tewari

Searching for a path between two nodes in a graph is one of the most well-studied and fundamental problems in computer science. In numerous domains such as robotics, AI, or biology, practitioners develop search heuristics to accelerate…

Machine Learning · Computer Science 2023-01-12 Michal Pándy , Weikang Qiu , Gabriele Corso , Petar Veličković , Rex Ying , Jure Leskovec , Pietro Liò

Time-series analysis plays a pivotal role across a range of critical applications, from finance to healthcare, which involves various tasks, such as forecasting and classification. To handle the inherent complexities of time-series data,…

Machine Learning · Computer Science 2024-05-20 Jiawei Li , Jingshu Peng , Haoyang Li , Lei Chen

In-context learning is the ability of a pretrained model to adapt to novel and diverse downstream tasks by conditioning on prompt examples, without optimizing any parameters. While large language models have demonstrated this ability, how…

Machine Learning · Computer Science 2023-05-23 Qian Huang , Hongyu Ren , Peng Chen , Gregor Kržmanc , Daniel Zeng , Percy Liang , Jure Leskovec
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