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Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set $X$ of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate…

Combinatorics · Mathematics 2021-01-01 Peter L. Erdos , Charles Semple , Mike Steel

We present a bijective algorithm with which an arbitrary permutation decomposes canonically into elementary blocks which we call families, which are sets with a specified number of ascents and descents. We show that families, arranged in an…

Combinatorics · Mathematics 2013-04-05 Adrian Ocneanu

A separated net is a set of points which is relatively dense and uniformly discrete (another name for a Delone set). We are dealing with tilings and separated nets in Euclidean spaces and with the question whether a given separated net is…

Metric Geometry · Mathematics 2007-11-26 Y. Solomon

The trophic levels of nodes in directed networks can reveal their functional properties. Moreover, the trophic coherence of a network, defined in terms of trophic levels, is related to properties such as cycle structure, stability and…

Physics and Society · Physics 2020-01-16 R. S. MacKay , S. Johnson , B. Sansom

This paper initiates a limit theory of permutation valued processes, building on the recent theory of permutons. We apply this to study the asymptotic behaviour of random sorting networks. We prove that the Archimedean path, the conjectured…

Probability · Mathematics 2019-11-05 Mustazee Rahman , Balint Virag , Mate Vizer

The recursive removal of leaves (dead end vertices) and their neighbors from an undirected network results, when this pruning algorithm stops, in a so-called core of the network. This specific subgraph should be distinguished from…

Disordered Systems and Neural Networks · Physics 2015-06-12 N. Azimi-Tafreshi , S. N. Dorogovtsev , J. F. F. Mendes

In this article, Temperley's bijection between spanning trees of the square grid on the one hand, and perfect matchings (also known as dimer coverings) of the square grid on the other, is extended to the setting of general planar directed…

Combinatorics · Mathematics 2007-05-23 Richard W. Kenyon , James G. Propp , David B. Wilson

We introduce the notion of a network's conduciveness, a probabilistically interpretable measure of how the network's structure allows it to be conducive to roaming agents, in certain conditions, from one portion of the network to another.…

Statistical Mechanics · Physics 2010-07-12 Valmir C. Barbosa

Much of social network analysis is - implicitly or explicitly - predicated on the assumption that individuals tend to be more similar to their friends than to strangers. Thus, an observed social network provides a noisy signal about the…

Social and Information Networks · Computer Science 2014-08-18 Ittai Abraham , Shiri Chechik , David Kempe , Aleksandrs Slivkins

The active bijection forms a package of results studied by the authors in a series of papers in oriented matroids. The present paper is intended to state the main results in the particular case, and more widespread language, of graphs. We…

Combinatorics · Mathematics 2018-07-19 Emeric Gioan , Michel Las Vergnas

Stochastic networks based on random point sets as nodes have attracted considerable interest in many applications, particularly in communication networks, including wireless sensor networks, peer-to-peer networks and so on. The study of…

Probability · Mathematics 2020-08-26 Subhroshekhar Ghosh , Kumarjit Saha

The Interval poset of a permutation is an effective way of capturing all the intervals of the permutation and the inclusions between them and was introduced recently by Tenner. Thi paper explores the geometric interpretation of interval…

Discrete Mathematics · Computer Science 2024-06-25 Eli Bagno , Estrella Eisenberg , Shulamit Reches , Moriah Sigron

We consider a diffusion process on the edges of a finite network and allow for feedback effects between different, possibly non-adjacent edges. This generalizes the setting that is common in the literature, where the only considered…

Functional Analysis · Mathematics 2010-05-13 Stefano Cardanobile , Delio Mugnolo , Robin Nittka

We provide a framework for modeling social network formation through conditional multinomial logit models from discrete choice and random utility theory, in which each new edge is viewed as a "choice" made by a node to connect to another…

Social and Information Networks · Computer Science 2020-05-22 Jan Overgoor , Austin R. Benson , Johan Ugander

Arboreal networks are multi-rooted phylogenetic networks whose underlying graph is a tree. We give an encoding of stack-free arboreal networks in terms of triplets and the novel concept of a duet. This yields a polynomial time algorithm to…

Discrete Mathematics · Computer Science 2026-05-05 Katharina T. Huber , Katherine St. John

The set of all perfect matchings of a plane (weakly) elementary bipartite graph equipped with a partial order is a poset, moreover the poset is a finite distributive lattice and its Hasse diagram is isomorphic to $Z$-transformation directed…

Combinatorics · Mathematics 2018-10-18 Xu Wang , Xuxu Zhao , Haiyuan Yao

We introduce and study the lattice of generalized partitions, called weighted partitions. This lattice possesses similar properties of the lattice of partitions. By use of the pictorial representation of a weighted partition, the total…

Combinatorics · Mathematics 2023-01-02 Keiichi Shigechi

Network science provides a universal framework for modeling complex systems, contrasting the reductionist approach generally adopted in physics. In a prototypical study, we utilize network models created from spectroscopic data of atoms to…

Network or graph structures are ubiquitous in the study of complex systems. Often, we are interested in complexity trends of these system as it evolves under some dynamic. An example might be looking at the complexity of a food web as…

Information Theory · Computer Science 2012-01-23 Russell K. Standish

Generating trees are a useful technique in the enumeration of various combinatorial objects, particularly restricted permutations. Quite often the generating tree for the set of permutations avoiding a set of patterns requires infinitely…

Combinatorics · Mathematics 2007-05-23 Vince Vatter