Related papers: Networks bijective to permutations
Tree sets are abstract structures that can be used to model various tree-shaped objects in combinatorics. Finite tree sets can be represented by finite graph-theoretical trees. We extend this representation theory to infinite tree sets.…
We introduce a new combinatorial object called tower diagrams and prove fundamental properties of these objects. We also introduce an algorithm that allows us to slide words to tower diagrams. We show that the algorithm is well-defined only…
We show that hypernetworks can be regarded as posets which, in their turn, have a natural interpretation as simplicial complexes and, as such, are endowed with an intrinsic notion of curvature, namely the Forman Ricci curvature, that…
Invariants for complicated objects such as those arising in phylogenetics, whether they are invariants as matrices, polynomials, or other mathematical structures, are important tools for distinguishing and working with such objects. In this…
Motivation coming from the study of affine Weyl groups, a structure of ranked poset is defined on the set of circular permutations in $S_n$ (that is, $n$-cycles). It is isomorphic to the poset of so-called admitted vectors, and to an…
The set of all permutations, ordered by pattern containment, forms a poset. This paper presents the first explicit major results on the topology of intervals in this poset. We show that almost all (open) intervals in this poset have a…
Phylogenetic networks are becoming of increasing interest to evolutionary biologists due to their ability to capture complex non-treelike evolutionary processes. From a combinatorial point of view, such networks are certain types of rooted…
A barcode is a finite multiset of intervals on the real line. Jaramillo-Rodriguez (2023) previously defined a map from the space of barcodes with a fixed number of bars to a set of multipermutations, which presented new combinatorial…
It is known when we call a poset P, a $\mathcal{P}$-chain permutational poset, given a subset of permutations $\mathcal{P}$ of the symmetric group $S_{n}$. In this work, we use the same idea to study subsets of words of length $n$, that are…
Networks are ubiquitous in biology and computational approaches have been largely investigated for their inference. In particular, supervised machine learning methods can be used to complete a partially known network by integrating various…
A network is said to show assortative mixing if the nodes in the network that have many connections tend to be connected to other nodes with many connections. We define a measure of assortative mixing for networks and use it to show that…
This note reformulates certain classical combinatorial duality theorems in the context of order lattices. For source-target networks, we generalize bottleneck path-cut and flow-cut duality results to edges with capacities in a distributive…
This paper studies \emph{Dirichlet arrangements}, a generalization of graphic hyperplane arrangements arising from electrical networks and order polytopes of finite posets. We generalize descriptions of combinatorial features of graphic…
Some posets of binary leaf-labeled trees are shown to be supersolvable lattices and explicit EL-labelings are given. Their characteristic polynomials are computed, recovering their known factorization in a different way.
The traditional node percolation map of directed networks is reanalyzed in terms of edges. In the percolated phase, edges can mainly organize into five distinct giant connected components, interfaces bridging the communication of nodes in…
We show that any primitive substitution tiling of the plane creates a separated net which is biLipschitz to the integer lattice. Then we show that if H is a primitive Pisot substitution in an Euclidean space, for every separated net Y, that…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
We propose a novel method for network inference from partially observed edges using a node-specific degree prior. The degree prior is derived from observed edges in the network to be inferred, and its hyper-parameters are determined by…
Bayesian networks are directed acyclic graphs representing independence relationships among a set of random variables. A random variable can be regarded as a set of exhaustive and mutually exclusive propositions. We argue that there are…
For a labeled tree on the vertex set $\set{1,2,\ldots,n}$, the local direction of each edge $(i\,j)$ is from $i$ to $j$ if $i<j$. For a rooted tree, there is also a natural global direction of edges towards the root. The number of edges…