Related papers: Networks bijective to permutations
A permutation graph is a graph whose edges are given by inversions of a permutation. We study the Abelian sandpile model (ASM) on such graphs. We exhibit a bijection between recurrent configurations of the ASM on permutation graphs and the…
Tree sets are posets with additional structure that generalize tree-like objects in graphs, matroids, or other combinatorial structures. They are a special class of abstract separation systems. We study infinite tree sets and how they…
Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…
Network or graph structures are ubiquitous in the study of complex systems. Often, we are interested in complexity trends of these system as it evolves under some dynamic. An example might be looking at the complexity of a food web as…
Semidirected networks have received interest in evolutionary biology as the appropriate generalization of unrooted trees to networks, in which some but not all edges are directed. Yet these networks lack proper theoretical study. We define…
We present the pattern underlying some of the properties of natural numbers, using the framework of complex networks. The network used is a divisibility network in which each node has a fixed identity as one of the natural numbers and the…
Tree-like tableaux are objects in bijection with alternative or permutation tableaux. They have been the subject of a fruitful combinatorial study for the past few years. In the present work, we define and study a new subclass of tree-like…
A determinant property of the structure of a biological network is the distribution of local connectivity patterns, i.e., network motifs. In this work, a method for creating directed, unweighted networks while promoting a certain…
The interval poset of a permutation is the set of intervals of a permutation, ordered with respect to inclusion. It has been introduced and studied recently in [B. Tenner, arXiv:2007.06142]. We study this poset from the perspective of the…
Many real-world problems, e.g. object detection, have outputs that are naturally expressed as sets of entities. This creates a challenge for traditional deep neural networks which naturally deal with structured outputs such as vectors,…
A directed acyclic network is considered where all the terminals need to recover the sum of the symbols generated at all the sources. We call such a network a sum-network. It is shown that there exists a solvably (and linear solvably)…
The biased net paradigm was the first general and empirically tractable scheme for parameterizing complex patterns of dependence in networks, expressing deviations from uniform random graph structure in terms of latent ``bias events,''…
Phylogenetic networks are a generalization of evolutionary trees that are used by biologists to represent the evolution of organisms which have undergone reticulate evolution. Essentially, a phylogenetic network is a directed acyclic graph…
It was recently shown that a large class of phylogenetic networks, the `labellable' networks, is in bijection with the set of `expanding' covers of finite sets. In this paper, we show how several prominent classes of phylogenetic networks…
In evolutionary biology, phylogenetic networks are graphs that provide a flexible framework for representing complex evolutionary histories that involve reticulate evolutionary events. Recently phylogenetic studies have started to focus on…
We establish a novel bijective encoding that represents permutations as forests of decorated (or enriched) trees. This allows us to prove local convergence of uniform random permutations from substitution-closed classes satisfying a…
Relations between discrete quantities such as people, genes, or streets can be described by networks, which consist of nodes that are connected by edges. Network analysis aims to identify important nodes in a network and to uncover…
The class of ranked tree-child networks, tree-child networks arising from an evolution process with a fixed embedding into the plane, has recently been introduced by Bienvenu, Lambert, and Steel. These authors derived counting results for…
We give an account on what is known on the subject of permutation matchings, which are bijections of a finite regular semigroup that map each element to one of its inverses. This includes partial solutions to some open questions, including…
We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…