Related papers: 0-1 laws for pattern occurrences in phylogenetic t…
We show that the growth of a unimodular random rooted tree $(T,o)$ of degree bounded by $d$ always exists, assuming its upper growth passes the critical threshold $\sqrt{d-1}$. This complements Timar's work who showed the possible…
We show that the transience or recurrence of a random walk in certain random environments on an arbitrary infinite locally finite tree is determined by the branching number of the tree, which is a measure of the average number of branches…
The sequence A120986 in the Encyclopedia of Integer Sequences counts ternary trees according to the number of nodes and the number of middle edges. Using a certain substition, the underlying cubic equation can be factored. This leads to an…
Connected acyclic graphs (trees) are data objects that hierarchically organize categories. Collections of trees arise in a diverse variety of fields, including evolutionary biology, public health, machine learning, social sciences and…
Consider the d-dimensional lattice Z^d where each vertex is ``open'' or ``closed'' with probability p or 1-p, respectively. An open vertex v is connected by an edge to the closest open vertex w such that the dth co-ordinates of v and w…
A binary phylogenetic network may or may not be obtainable from a tree by the addition of directed edges (arcs) between tree arcs. Here, we establish a precise and easily tested criterion (based on `2-SAT') that efficiently determines…
By extending the breadth first search algorithm to any d-type critical or subcritical irreducible branching forest, we show that such forests may be encoded through d independent, integer valued, d-dimensional random walks. An application…
A central limit theorem for binary tree is numerically examined. Two types of central limit theorem for higher-order branches are formulated. A topological structure of a binary tree is expressed by a binary sequence, and the…
In this thesis the properties of two kinds of non-uniform random recursive trees are studied. In the first model weights are assigned to each node, thus altering the attachment probabilities. We will call these trees weighted recursive…
The maximum agreement forest (MAF) problem in phylogenetics takes as input a set t >= 2 of binary phylogenetic trees T on the same set of taxa X. It asks for a partition of X into the smallest number of blocks such that the subtrees induced…
We prove the following indistinguishability theorem for $k$-tuples of trees in the uniform spanning forest of $\mathbb{Z}^d$: Suppose that $\mathscr{A}$ is a property of a $k$-tuple of components that is stable under finite modifications of…
Consider the $d$ dimensional lattice $\mathbb{Z}^d$ where each vertex is open or closed with probability $p$ or $1-p$ respectively. An open vertex $\mathbb{u} := (\mathbb{u}(1), \mathbb{u}(2),...,\mathbb{u}(d))$ is connected by an edge to…
Tanglegrams are a special class of graphs appearing in applications concerning cospeciation and coevolution in biology and computer science. They are formed by identifying the leaves of two rooted binary trees. We give an explicit formula…
Consider the following partial "sorting algorithm" on permutations: take the first entry of the permutation in one-line notation and insert it into the position of its own value. Continue until the first entry is 1. This process imposes a…
The monadic second-order theory of trees allows quantification over elements and over arbitrary subsets. We classify the class of trees with respect to the question: does a tree T have a definable choice function (by a monadic formula with…
We prime-encode the natural numbers via recursive factorisation, iterated to the exponents, generating a corpus of planar rooted trees equivalently represented as Dyck words. This forms a deterministic text endowed with internal rules.…
We identify the mean growth of the independence number of random binary search trees and random recursive trees and show normal fluctuations around their means. Similarly we also show normal limit laws for the domination number and…
We study several enumeration problems connected to linear trees, a broad class which includes stars, paths, generalized stars, and caterpillars. We provide generating functions for counting the number of linear trees on $n$ vertices,…
For a pair consisting of a gene tree and a species tree, the ancestral configurations at an internal node of the species tree are the distinct sets of gene lineages that can be present at that node. Ancestral configurations appear in…
In this paper, we introduce two families of planar and self-similar graphs which have small-world properties. The constructed models are based on an iterative process where each step of a certain formulation of modules results in a final…