Related papers: 0-1 laws for pattern occurrences in phylogenetic t…
A fundamental problem in the study of phylogenetic networks is to determine whether or not a given phylogenetic network contains a given phylogenetic tree. We develop a quadratic-time algorithm for this problem for binary nearly-stable…
We study fringe subtrees of random $ m $-ary search trees and of preferential attachment trees, by putting them in the context of generalised P\'olya urns. In particular we show that for the random $ m $-ary search trees with $ m\leq 26 $…
We study randomly growing trees governed by the affine preferential attachment rule. Starting with a seed tree $S$, vertices are attached one by one, each linked by an edge to a random vertex of the current tree, chosen with a probability…
We extend the results of B. Bollobas, O. Riordan, J. Spencer, G. Tusnady, and Mori. We consider a model of random tree growth, where at each time unit a new node is added and attached to an already existing node chosen at random. The…
We generalize the poissonian evolving random graph model of Bauer and Bernard to deal with arbitrary degree distributions. The motivation comes from biological networks, which are well-known to exhibit non poissonian degree distribution. A…
This paper shows that decision trees constructed with Classification and Regression Trees (CART) and C4.5 methodology are consistent for regression and classification tasks, even when the number of predictor variables grows…
This paper studies increasing trees on $n$ labeled vertices, in which labels increase from the root to the leaves. It is known that the number of binary increasing trees coincides with the number of alternating permutations (Euler numbers).…
A $(1+\varepsilon)$-stretch tree cover of an edge-weighted $n$-vertex graph $G$ is a collection of trees, where every pair of vertices has a $(1+\varepsilon)$-stretch path in one of the trees. The celebrated Dumbbell Theorem by Arya et. al.…
Let v_1 and v_2 be two distinct vertices of a tree T_0. Let \phi_N^{(i)} (i=1,2) be the characteristic functions of the Sturm-Liouville problem on T_0 rooted at v_i with Neumann conditions at the root and let \phi_D^{(i)} (i=1,2) be the…
We prove the exponential growth of the cardinality of the set of numbers of spanning trees in simple (and planar) graphs on $n$ vertices, answering a question of Sedl\'a\v{c}ek from 1969. The proof uses a connection with continued…
The structure of an evolving network contains information about its past. Extracting this information efficiently, however, is, in general, a difficult challenge. We formulate a fast and efficient method to estimate the most likely history…
The frog model on the rooted d-ary tree changes from transient to recurrent as the number of frogs per site is increased. We prove that the location of this transition is on the same order as the degree of the tree.
This paper presents two new deterministic algorithms for constructing consensus trees. Given an input of k phylogenetic trees with identical leaf label sets and n leaves each, the first algorithm constructs the majority rule (+) consensus…
We ask the question "when will natural selection on a gene in a spatially structured population cause a detectable trace in the patterns of genetic variation observed in the contemporary population?". We focus on the situation in which…
The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
Tree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, R\'acz, and Rashtchian used combinatorial…
Counting the number of spanning trees in specific classes of graphs has attracted increasing attention in recent years. In this note, we present unified proofs and generalizations of several results obtained in the 2020s. The main method is…
Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…
A Yule tree is the result of a branching process with constant birth and death rates. Such a process serves as an instructive null model of many empirical systems, for instance, the evolution of species leading to a phylogenetic tree.…