English
Related papers

Related papers: Are Sounds Sound for Phylogenetic Reconstruction?

200 papers

This work describes an implementation of the "extended alignment" (or "multitiers") approach for cognate reflex prediction, submitted to "Prediction of Cognate Reflexes" shared task. Similarly to List2022d, the technique involves an…

Computation and Language · Computer Science 2022-05-20 Tiago Tresoldi

Transfer learning aims to reduce the amount of data required to excel at a new task by re-using the knowledge acquired from learning other related tasks. This paper proposes a novel transfer learning scenario, which distills robust phonetic…

Computation and Language · Computer Science 2019-07-11 Wei-Ning Hsu , David Harwath , James Glass

We present a method for constructing taxonomic trees (e.g., WordNet) using pretrained language models. Our approach is composed of two modules, one that predicts parenthood relations and another that reconciles those predictions into trees.…

Computation and Language · Computer Science 2021-11-03 Catherine Chen , Kevin Lin , Dan Klein

Genomes may be analyzed from an information viewpoint as very long strings, containing functional elements of variable length, which have been assembled by evolution. In this work an innovative information theory based algorithm is…

Genomics · Quantitative Biology 2020-09-23 Vincenzo Bonnici , Giuditta Franco , Vincenzo Manca

Phonology, as it is practiced, is deeply computational. Phonological analysis is data-intensive and the resulting models are nothing other than specialized data structures and algorithms. In the past, phonological computation - managing…

Computation and Language · Computer Science 2014-11-17 Steven Bird

Using phonological speech vocoding, we propose a platform for exploring relations between phonology and speech processing, and in broader terms, for exploring relations between the abstract and physical structures of a speech signal. Our…

Computation and Language · Computer Science 2016-11-16 Milos Cernak , Stefan Benus , Alexandros Lazaridis

Phylogenetic trees and networks are graphs used to model evolutionary relationships, with trees representing strictly branching histories and networks allowing for events in which lineages merge, called reticulation events. While the…

Populations and Evolution · Quantitative Biology 2026-04-17 Martin Frohn , Niels Holtgrefe , Leo van Iersel , Mark Jones , Steven Kelk

Semantically-aligned $(speech, image)$ datasets can be used to explore "visually-grounded speech". In a majority of existing investigations, features of an image signal are extracted using neural networks "pre-trained" on other tasks (e.g.,…

Machine Learning · Computer Science 2020-10-30 Masood S. Mortazavi

A phylogenetic tree is an important way in Bioinformatics to find the evolutionary relationship among biological species. In this research, a proposed model is described for the estimation of a phylogenetic tree for a given set of data. To…

Populations and Evolution · Quantitative Biology 2025-09-03 S M Rafiuddin

Research in speech technologies and comparative linguistics depends on access to diverse and accessible speech data. The UCLA Phonetics Lab Archive is one of the earliest multilingual speech corpora, with long-form audio recordings and…

Computation and Language · Computer Science 2024-03-29 Eleanor Chodroff , Blaž Pažon , Annie Baker , Steven Moran

A central theme in phylogenetics is the reconstruction and analysis of evolutionary trees from a given set of data. To determine the optimal search methods for reconstructing trees, it is crucial to understand the size and structure of the…

Populations and Evolution · Quantitative Biology 2016-08-15 Jamie V. de Jong , Jeanette C McLeod , Mike Steel

Galled trees, directed acyclic graphs that model evolutionary histories with isolated hybridization events, have become very popular due to both their biological significance and the existence of polynomial time algorithms for their…

Populations and Evolution · Quantitative Biology 2009-06-08 Gabriel Cardona , Merce Llabres , Francesc Rossello , Gabriel Valiente

Recent advances in foundation models have enabled audio-generative models that produce high-fidelity sounds associated with music, events, and human actions. Despite the success achieved in modern audio-generative models, the conventional…

Sound · Computer Science 2024-08-30 Tiantian Feng , Dimitrios Dimitriadis , Shrikanth Narayanan

Phonology is the systematic study of the sounds used in language, their internal structure, and their composition into syllables, words and phrases. Computational phonology is the application of formal and computational techniques to the…

Computation and Language · Computer Science 2007-05-23 Steven Bird

Phonology, the study of speech's structure and pronunciation rules, is a critical yet often overlooked component in Large Language Model (LLM) research. LLMs are widely used in various downstream applications that leverage phonology such as…

Computation and Language · Computer Science 2024-04-08 Ashima Suvarna , Harshita Khandelwal , Nanyun Peng

Tree-child networks are an important network class which are used in phylogenetics to model reticulate evolution. In a recent paper, Pons and Batle (2021) conjectured a relation between tree-child networks and certain words. In this short…

Populations and Evolution · Quantitative Biology 2021-10-11 Michael Fuchs , Hexuan Liu , Guan-Ru Yu

Folktales are a rich resource of knowledge about the society and culture of a civilisation. Digital folklore research aims to use automated techniques to better understand these folktales, and it relies on abstract representations of the…

Computation and Language · Computer Science 2024-11-11 JA Meaney , Beatrice Alex , William Lamb

The aim of this review is to present and analyze the probabilistic models of mathematical phylogenetics which have been intensively used in recent years in biology as the cornerstone of attempts to infer and reconstruct the ancestral…

Populations and Evolution · Quantitative Biology 2020-01-08 Peter D Jarvis , Jeremy G Sumner

Typing methods are widely used in the surveillance of infectious diseases, outbreaks investigation and studies of the natural history of an infection. And their use is becoming standard, in particular with the introduction of High…

Data Structures and Algorithms · Computer Science 2020-06-16 Cátia Vaz , Marta Nascimento , João A. Carriço , Tatiana Rocher , Alexandre P. Francisco

With recent research advancements, deep learning models are becoming attractive and powerful choices for speech enhancement in real-time applications. While state-of-the-art models can achieve outstanding results in terms of speech quality…

Audio and Speech Processing · Electrical Eng. & Systems 2021-05-20 Sebastian Braun , Hannes Gamper , Chandan K. A. Reddy , Ivan Tashev