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Related papers: Are Sounds Sound for Phylogenetic Reconstruction?

200 papers

Regular sound correspondences constitute the principal evidence in historical language comparison. Despite the heuristic focus on regularity, it is often more an intuitive judgement than a quantified evaluation, and irregularity is more…

Computation and Language · Computer Science 2026-02-03 Frederic Blum , Johann-Mattis List

Phylogenetics is the study of the evolutionary relationships between organisms. One of the main challenges in the field is to take biological data for a group of organisms and to infer an evolutionary tree, a graph that represents these…

Populations and Evolution · Quantitative Biology 2019-06-05 Elizabeth Gross , Colby Long , Joseph Rusinko

Phylogenetic comparative methods are new in our field and are shrouded, for most linguists, in at least a little mystery. Yet the path that led to their discovery in comparative biology is so similar to the methodological history of…

Populations and Evolution · Quantitative Biology 2022-01-04 Jayden L. Macklin-Cordes , Erich R. Round

There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks, or cancerous cells in tumor progression trees.…

Data Structures and Algorithms · Computer Science 2023-12-22 António Pedro Branco , Cátia Vaz , Alexandre P. Francisco

Mapping words into a fixed-dimensional vector space is the backbone of modern NLP. While most word embedding methods successfully encode semantic information, they overlook phonetic information that is crucial for many tasks. We develop…

Computation and Language · Computer Science 2024-03-27 Vilém Zouhar , Kalvin Chang , Chenxuan Cui , Nathaniel Carlson , Nathaniel Robinson , Mrinmaya Sachan , David Mortensen

The network characteristics based on the phonological similarities in the lexicons of several languages were examined. These languages differed widely in their history and linguistic structure, but commonalities in the network…

Physics and Society · Physics 2015-05-13 Samuel Arbesman , Steven H. Strogatz , Michael S. Vitevitch

In this article we propose a novel method to estimate the frequency distribution of linguistic variables while controlling for statistical non-independence due to shared ancestry. Unlike previous approaches, our technique uses all available…

Populations and Evolution · Quantitative Biology 2021-03-22 Gerhard Jäger , Johannes Wahle

Using Phylogenetic Algebraic Geometry, we analyze computationally the phylogenetic tree of subfamilies of the Indo-European language family, using data of syntactic structures. The two main sources of syntactic data are the SSWL database…

Computation and Language · Computer Science 2019-06-26 Kevin Shu , Andrew Ortegaray , Robert Berwick , Matilde Marcolli

This work presents a novel methodology for calculating the phonetic similarity between words taking motivation from the human perception of sounds. This metric is employed to learn a continuous vector embedding space that groups similar…

Computation and Language · Computer Science 2021-10-01 Rahul Sharma , Kunal Dhawan , Balakrishna Pailla

A phylogenetic tree is a graphical representation of an evolutionary history of taxa in which the leaves correspond to the taxa and the non-leaves correspond to speciations. One of important problems in phylogenetic analysis is to assemble…

Combinatorics · Mathematics 2022-02-25 Hiroshi Hirai , Yuni Iwamasa

A methodology based upon recurrence quantification analysis is proposed for the study of orthographic structure of written texts. Five different orthographic data sets (20th century Italian poems, 20th century American poems, contemporary…

cmp-lg · Computer Science 2012-08-27 F. Orsucci , K. Walter , A. Giuliani , C. L. Webber, , J. P. Zbilut

In the small phylogeny problem we, are given a phylogenetic tree and gene orders of the extant species and our goal is to reconstruct all of the ancestral genomes so that the number of evolutionary operations is minimized. Algorithms for…

Populations and Evolution · Quantitative Biology 2015-03-17 Jakub Kováč , Broňa Brejová , Tomáš Vinař

It is known that evolution strategies in continuous domains might not converge in the presence of noise. It is also known that, under mild assumptions, and using an increasing number of resamplings, one can mitigate the effect of additive…

Optimization and Control · Mathematics 2014-04-10 Marie-Liesse Cauwet

Recent advances in machine learning and the availability of articulatory datasets allow vocal tract synthesis to be conditioned on phonetic sequences, a primary task of articulatory speech synthesis. However, quality assessment needs a…

Computation and Language · Computer Science 2026-05-21 Vinicius Ribeiro , Yves Laprie

This paper examines how linguistic similarity affects cross-lingual phonetic representation in speech processing for low-resource languages, emphasizing effective source language selection. Previous cross-lingual research has used various…

Audio and Speech Processing · Electrical Eng. & Systems 2025-01-14 Minu Kim , Kangwook Jang , Hoirin Kim

Motivation: Word-based or `alignment-free' methods for phylogeny reconstruction are much faster than traditional approaches, but they are generally less accurate. Most of these methods calculate pairwise distances for a set of input…

Populations and Evolution · Quantitative Biology 2018-05-01 Thomas Dencker , Chris-Andre Leimeister , Michael Gerth , Christoph Bleidorn , Sagi Snir , Burkhard Morgenstern

Historical linguists have long written a kind of incompletely formalized ''program'' that converts reconstructed words in an ancestor language into words in one of its attested descendants that consist of a series of ordered string rewrite…

Computation and Language · Computer Science 2025-04-03 Atharva Naik , Kexun Zhang , Nathaniel Robinson , Aravind Mysore , Clayton Marr , Hong Sng , Rebecca Byrnes , Anna Cai , Kalvin Chang , David Mortensen

Identifying similar documents within extensive volumes of data poses a significant challenge. To tackle this issue, researchers have developed a variety of effective distributed computing techniques. With the advancement of computing power…

Neural and Evolutionary Computing · Computer Science 2025-07-17 Chandrashekar Muniyappa , Eunjin Kim

Ancestral sequence reconstruction is a key task in computational biology. It consists in inferring a molecular sequence at an ancestral species of a known phylogeny, given descendant sequences at the tip of the tree. In addition to its many…

Populations and Evolution · Quantitative Biology 2022-07-27 Brandon Legried , Sebastien Roch

The introduction of audio latent diffusion models possessing the ability to generate realistic sound clips on demand from a text description has the potential to revolutionize how we work with audio. In this work, we make an initial attempt…

Audio and Speech Processing · Electrical Eng. & Systems 2023-10-17 Dimitrios Bralios , Gordon Wichern , François G. Germain , Zexu Pan , Sameer Khurana , Chiori Hori , Jonathan Le Roux
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