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High-throughput sequencing technologies have led to explosive growth of genomic databases; one of which will soon reach hundreds of terabytes. For many applications we want to build and store indexes of these databases but constructing such…

Data Structures and Algorithms · Computer Science 2018-11-19 Christina Boucher , Travis Gagie , Alan Kuhnle , Ben Langmead , Giovanni Manzini , Taher Mun

Text classification algorithms investigate the intricate relationships between words or phrases and attempt to deduce the document's interpretation. In the last few years, these algorithms have progressed tremendously. Transformer…

Computation and Language · Computer Science 2022-06-28 Snehal Khandve , Vedangi Wagh , Apurva Wani , Isha Joshi , Raviraj Joshi

Current methods which compress multisets at an optimal rate have computational complexity that scales linearly with alphabet size, making them too slow to be practical in many real-world settings. We show how to convert a compression…

Information Theory · Computer Science 2023-02-28 Daniel Severo , James Townsend , Ashish Khisti , Alireza Makhzani , Karen Ullrich

Grammar compression is, next to Lempel-Ziv (LZ77) and run-length Burrows-Wheeler transform (RLBWT), one of the most flexible approaches to representing and processing highly compressible strings. The main idea is to represent a text as a…

Data Structures and Algorithms · Computer Science 2022-01-06 Dominik Kempa , Ben Langmead

In this paper, we present the first study of the computational complexity of converting an automata-based text index structure, called the Compact Directed Acyclic Word Graph (CDAWG), of size $e$ for a text $T$ of length $n$ into other text…

Data Structures and Algorithms · Computer Science 2023-08-07 Hiroki Arimura , Shunsuke Inenaga , Yasuaki Kobayashi , Yuto Nakashima , Mizuki Sue

Data compression has become a necessity not only the in the field of communication but also in various scientific experiments. The data that is being received is more and the processing time required has also become more. A significant…

Information Theory · Computer Science 2016-07-29 Gautam R , S Murali

Discovering the logical sequence of events is one of the cornerstones in Natural Language Understanding. One approach to learn the sequence of events is to study the order of sentences in a coherent text. Sentence ordering can be applied in…

Computation and Language · Computer Science 2021-08-26 Melika Golestani , Seyedeh Zahra Razavi , Zeinab Borhanifard , Farnaz Tahmasebian , Hesham Faili

Transformers have impressive generalization capabilities on tasks with a fixed context length. However, they fail to generalize to sequences of arbitrary length, even for seemingly simple tasks such as duplicating a string. Moreover, simply…

We propose a novel transformer-based styled handwritten text image generation approach, HWT, that strives to learn both style-content entanglement as well as global and local writing style patterns. The proposed HWT captures the long and…

Computer Vision and Pattern Recognition · Computer Science 2021-08-06 Ankan Kumar Bhunia , Salman Khan , Hisham Cholakkal , Rao Muhammad Anwer , Fahad Shahbaz Khan , Mubarak Shah

Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…

Data Structures and Algorithms · Computer Science 2022-07-05 Zoe Xi , William Kuszmaul

Code-switching (CSW) text generation has been receiving increasing attention as a solution to address data scarcity. In light of this growing interest, we need more comprehensive studies comparing different augmentation approaches. In this…

Computation and Language · Computer Science 2023-10-25 Injy Hamed , Nizar Habash , Ngoc Thang Vu

In highly repetitive strings, like collections of genomes from the same species, distinct measures of repetition all grow sublinearly in the length of the text, and indexes targeted to such strings typically depend only on one of these…

Data Structures and Algorithms · Computer Science 2015-02-24 Djamal Belazzougui , Fabio Cunial , Travis Gagie , Nicola Prezza , Mathieu Raffinot

Uniform random rotations (URRs) are a common preprocessing step in modern quantization approaches used for gradient compression, inference acceleration, KV-cache compression, model weight quantization, and approximate nearest-neighbor…

Machine Learning · Computer Science 2026-05-08 Ran Ben-Basat , William Kuszmaul , Michael Mitzenmacher , Amit Portnoy , Shay Vargaftik

As one popular modeling approach for end-to-end speech recognition, attention-based encoder-decoder models are known to suffer the length bias and corresponding beam problem. Different approaches have been applied in simple beam search to…

Audio and Speech Processing · Electrical Eng. & Systems 2023-10-24 Wei Zhou , Ralf Schlüter , Hermann Ney

We propose a new succinct representation of labeled trees which represents a tree T using |T|H_k(T) number of bits (plus some smaller order terms), where |T|H_k(T) denotes the k-th order (tree label) entropy, as defined by Ferragina at al.…

Data Structures and Algorithms · Computer Science 2018-07-18 Michał Gańczorz

String matching is a fundamental problem in computer science, with critical applications in text retrieval, bioinformatics, and data analysis. Among the numerous solutions that have emerged for this problem in recent decades,…

Data Structures and Algorithms · Computer Science 2025-03-10 Simone Faro , Arianna Pavone , Caterina Viola

In Transformer-based neural machine translation (NMT), the positional encoding mechanism helps the self-attention networks to learn the source representation with order dependency, which makes the Transformer-based NMT achieve…

Computation and Language · Computer Science 2020-04-09 Kehai Chen , Rui Wang , Masao Utiyama , Eiichiro Sumita

In recent years, the continuous wavelet transform (CWT) has been employed as a spectral feature extractor for acoustic recognition tasks in conjunction with machine learning and deep learning models. However, applying the CWT to each…

Audio and Speech Processing · Electrical Eng. & Systems 2025-12-01 Dang Thoai Phan

In neural machine translation (NMT), it is has become standard to translate using subword units to allow for an open vocabulary and improve accuracy on infrequent words. Byte-pair encoding (BPE) and its variants are the predominant approach…

Computation and Language · Computer Science 2018-10-23 Elizabeth Salesky , Andrew Runge , Alex Coda , Jan Niehues , Graham Neubig

Most neural machine translation systems are built upon subword units extracted by methods such as Byte-Pair Encoding (BPE) or wordpiece. However, the choice of number of merge operations is generally made by following existing recipes. In…

Computation and Language · Computer Science 2019-06-26 Shuoyang Ding , Adithya Renduchintala , Kevin Duh