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Large language models can answer questions about textbooks, lecture notes, and programming exercises more reliably when their answers are grounded in an explicit knowledge source. Retrieval-augmented generation (RAG) is a common approach:…

Information Retrieval · Computer Science 2026-05-25 Tom Verhoeff

Retrosynthesis poses a key challenge in biopharmaceuticals, aiding chemists in finding appropriate reactant molecules for given product molecules. With reactants and products represented as 2D graphs, retrosynthesis constitutes a…

Machine Learning · Computer Science 2025-07-22 Yiming Wang , Yuxuan Song , Yiqun Wang , Minkai Xu , Rui Wang , Hao Zhou , Wei-Ying Ma

Reaction prediction, a critical task in synthetic chemistry, is to predict the outcome of a reaction based on given reactants. Generative models like Transformer have typically been employed to predict the reaction product. However, these…

Machine Learning · Computer Science 2025-11-13 Taicheng Guo , Changsheng Ma , Xiuying Chen , Bozhao Nan , Kehan Guo , Shichao Pei , Nitesh V. Chawla , Olaf Wiest , Xiangliang Zhang

Transformer-based deep neural networks have revolutionized the field of molecular-related prediction tasks by treating molecules as symbolic sequences. These models have been successfully applied in various organic chemical applications by…

Chemical Physics · Physics 2023-11-14 Tatsuya Sagawa , Ryosuke Kojima

We investigate the problem of Chinese Grammatical Error Correction (CGEC) and present a new framework named Tail-to-Tail (\textbf{TtT}) non-autoregressive sequence prediction to address the deep issues hidden in CGEC. Considering that most…

Computation and Language · Computer Science 2021-10-27 Piji Li , Shuming Shi

Predicting how cells respond to genetic perturbations is fundamental to understanding gene function, disease mechanisms, and therapeutic development. While recent deep learning approaches have shown promise in modeling single-cell…

Machine Learning · Computer Science 2026-03-10 Andrea Giuseppe Di Francesco , Andrea Rubbi , Pietro Liò

Although contemporary text-to-image generation models have achieved remarkable breakthroughs in producing visually appealing images, their capacity to generate precise and flexible typographic elements, especially non-Latin alphabets,…

Computer Vision and Pattern Recognition · Computer Science 2025-04-29 Haofan Wang , Yujia Xu , Yimeng Li , Junchen Li , Chaowei Zhang , Jing Wang , Kejia Yang , Zhibo Chen

In the era of sustainable smart agriculture, a massive amount of agricultural news text is being posted on the Internet, in which massive agricultural knowledge has been accumulated. In this context, it is urgent to explore effective text…

Computation and Language · Computer Science 2023-05-25 Biao Zhao , Weiqiang Jin , Javier Del Ser , Guang Yang

We propose CHRT (Control Hidden Representation Transformation) - a controlled language generation framework that steers large language models to generate text pertaining to certain attributes (such as toxicity). CHRT gains attribute control…

Computation and Language · Computer Science 2023-06-01 Vaibhav Kumar , Hana Koorehdavoudi , Masud Moshtaghi , Amita Misra , Ankit Chadha , Emilio Ferrara

Attention-based end-to-end text-to-speech synthesis (TTS) is superior to conventional statistical methods in many ways. Transformer-based TTS is one of such successful implementations. While Transformer TTS models the speech frame sequence…

Machine Learning · Computer Science 2021-03-29 Rui Liu , Berrak Sisman , Haizhou Li

Chemical synthesis remains a critical bottleneck in the discovery and manufacture of functional small molecules. AI-based synthesis planning models could be a potential remedy to find effective syntheses, and have made progress in recent…

Retrieval-Augmented Generation (RAG) has emerged as a powerful approach for enhancing large language models' question-answering capabilities through the integration of external knowledge. However, when adapting RAG systems to specialized…

Computation and Language · Computer Science 2026-01-19 Xin Sun , Zhongqi Chen , Qiang Liu , Shu Wu , Bowen Song , Weiqiang Wang , Zilei Wang , Liang Wang

As a common approach to learning English, reading comprehension primarily entails reading articles and answering related questions. However, the complexity of designing effective exercises results in students encountering standardized…

Computation and Language · Computer Science 2023-09-26 Xizhe Wang , Yihua Zhong , Changqin Huang , Xiaodi Huang

We investigate response selection for multi-turn conversation in retrieval-based chatbots. Existing studies pay more attention to the matching between utterances and responses by calculating the matching score based on learned features,…

Computation and Language · Computer Science 2021-01-18 Yongkang Liu , Shi Feng , Daling Wang , Kaisong Song , Feiliang Ren , Yifei Zhang

Automated code generation can be a powerful technique for software development, significantly reducing developers' efforts and time required to create new code by generating it automatically based on requirements. Recently, OpenAI's…

Software Engineering · Computer Science 2023-05-16 Chao Liu , Xuanlin Bao , Hongyu Zhang , Neng Zhang , Haibo Hu , Xiaohong Zhang , Meng Yan

Generating desired images conditioned on given text descriptions has received lots of attention. Recently, diffusion models and autoregressive models have demonstrated their outstanding expressivity and gradually replaced GAN as the favored…

Computer Vision and Pattern Recognition · Computer Science 2025-01-03 Xiaozhou You , Jian Zhang

We propose a new method to measure the task-specific accuracy of Retrieval-Augmented Large Language Models (RAG). Evaluation is performed by scoring the RAG on an automatically-generated synthetic exam composed of multiple choice questions…

Computation and Language · Computer Science 2024-05-24 Gauthier Guinet , Behrooz Omidvar-Tehrani , Anoop Deoras , Laurent Callot

Understanding gene regulation is a fundamental step towards understanding of how cells function and respond to environmental cues and perturbations. An important step in this direction is to infer the transcription factor-gene regulatory…

Molecular Networks · Quantitative Biology 2017-04-25 Yijie Wang , Dong-Yeon Cho , Hangnoh Lee , Justin Fear , Brian Oliver , Teresa M Przytycka

While machine learning has transformed polymer design by enabling rapid property prediction and candidate generation, translating these designs into experimentally realizable materials remains a critical challenge. Traditionally, the…

Soft Condensed Matter · Physics 2025-12-08 Sakshi Agarwal , Wei Xiong , Rampi Ramprasad

Existing research studies on cross-sentence relation extraction in long-form multi-party conversations aim to improve relation extraction without considering the explainability of such methods. This work addresses that gap by focusing on…

Computation and Language · Computer Science 2022-10-20 Alon Albalak , Varun Embar , Yi-Lin Tuan , Lise Getoor , William Yang Wang
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