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The recent trend in multiple object tracking (MOT) is heading towards leveraging deep learning to boost the tracking performance. In this paper, we propose a novel solution named TransSTAM, which leverages Transformer to effectively model…

Computer Vision and Pattern Recognition · Computer Science 2022-06-01 Peng Dai , Yiqiang Feng , Renliang Weng , Changshui Zhang

Cells in multicellular organisms coordinate to form structural and functional niches. With spatial transcriptomics (ST) enabling gene expression profiling in spatial contexts, it has been revealed that spatial niches serve as cohesive and…

Quantitative Methods · Quantitative Biology 2026-05-26 Mo Chen , Minsheng Hao , Xinquan Liu , Lin Deng , Peng Liu , Chen Li , Dongfang Wang , Kui Hua , Liang Guo , Xuegong Zhang , Lei Wei

In the era of information explosion, spatio-temporal data mining serves as a critical part of urban management. Considering the various fields demanding attention, e.g., traffic state, human activity, and social event, predicting multiple…

Artificial Intelligence · Computer Science 2023-09-19 Zijian Zhang , Xiangyu Zhao , Qidong Liu , Chunxu Zhang , Qian Ma , Wanyu Wang , Hongwei Zhao , Yiqi Wang , Zitao Liu

Cellular identity and function are linked to both their intrinsic genomic makeup and extrinsic spatial context within the tissue microenvironment. Spatial transcriptomics (ST) offers an unprecedented opportunity to study this, providing in…

Machine Learning · Computer Science 2026-02-16 Rui Yan , Xiaohan Xing , Xun Wang , Zixia Zhou , Md Tauhidul Islam , Lei Xing

Recent research in time series forecasting frequently investigates the integration of textual and visual modalities with numerical models to better navigate non-stationary environments. Despite delivering solid numerical results, existing…

Machine Learning · Computer Science 2026-05-26 Hui Cheng , Jinsheng Guo , Zhenhao Weng , Yan Qiao , Meng Li

The performance of transformers for time-series forecasting has improved significantly. Recent architectures learn complex temporal patterns by segmenting a time-series into patches and using the patches as tokens. The patch size controls…

Machine Learning · Computer Science 2024-03-25 Yitian Zhang , Liheng Ma , Soumyasundar Pal , Yingxue Zhang , Mark Coates

Spatial Transcriptomics (ST) profiles thousands of gene expression values at discrete spots with precise coordinates on tissue sections, preserving spatial context essential for clinical and pathological studies. With rising sequencing…

Computer Vision and Pattern Recognition · Computer Science 2026-03-24 Yishun Zhu , Jiaxin Qi , Jian Wang , Yuhua Zheng , Jianqiang Huang

Transformer has been widely used for self-supervised pre-training in Natural Language Processing (NLP) and achieved great success. However, it has not been fully explored in visual self-supervised learning. Meanwhile, previous methods only…

Computer Vision and Pattern Recognition · Computer Science 2021-10-26 Zhaowen Li , Zhiyang Chen , Fan Yang , Wei Li , Yousong Zhu , Chaoyang Zhao , Rui Deng , Liwei Wu , Rui Zhao , Ming Tang , Jinqiao Wang

Foundation models achieve state-of-the-art performance across different tasks, but their size and computational demands raise concerns about accessibility and sustainability. Existing efficiency methods often require additional retraining…

Knowledge distillation as an efficient knowledge transfer technique, has achieved remarkable success in unimodal scenarios. However, in cross-modal settings, conventional distillation methods encounter significant challenges due to data and…

Computer Vision and Pattern Recognition · Computer Science 2025-07-10 Hui Li , Pengfei Yang , Juanyang Chen , Le Dong , Yanxin Chen , Quan Wang

Multimodal learning systems often face substantial uncertainty due to noisy data, low-quality labels, and heterogeneous modality characteristics. These issues become especially critical in human-computer interaction settings, where data…

Artificial Intelligence · Computer Science 2025-11-21 Hyo-Jeong Jang

Spatial transcriptomics (ST) has emerged as a powerful technology for bridging histology imaging with gene expression profiling. However, its application has been limited by low throughput and the need for specialized experimental…

Computer Vision and Pattern Recognition · Computer Science 2025-06-09 Tinglin Huang , Tianyu Liu , Mehrtash Babadi , Wengong Jin , Rex Ying

Traditional spatiotemporal models generally rely on task-specific architectures, which limit their generalizability and scalability across diverse tasks due to domain-specific design requirements. In this paper, we introduce…

Computer Vision and Pattern Recognition · Computer Science 2025-03-27 Chen Tang , Xinzhu Ma , Encheng Su , Xiufeng Song , Xiaohong Liu , Wei-Hong Li , Lei Bai , Wanli Ouyang , Xiangyu Yue

Accurate and reliable brain tumor segmentation, particularly when dealing with missing modalities, remains a critical challenge in medical image analysis. Previous studies have not fully resolved the challenges of tumor boundary…

Computer Vision and Pattern Recognition · Computer Science 2025-07-31 Shenghao Zhu , Yifei Chen , Weihong Chen , Yuanhan Wang , Chang Liu , Shuo Jiang , Feiwei Qin , Changmiao Wang

From the nano-scale to the macro-scale, biological tissue is spatially heterogeneous. Even when tissue behavior is well understood, the exact subject specific spatial distribution of material properties is often unknown. And, when…

Tissues and Organs · Quantitative Biology 2020-11-02 Emma Lejeune , Bill Zhao

Modeling spatiotemporal dynamical systems is a fundamental challenge in machine learning. Transformer models have been very successful in NLP and computer vision where they provide interpretable representations of data. However, a…

Machine Learning · Computer Science 2023-08-01 Antonio H. de O. Fonseca , Emanuele Zappala , Josue Ortega Caro , David van Dijk

Spatial transcriptomics enables gene expression profiling with spatial context, offering unprecedented insights into the tissue microenvironment. However, most computational models treat genes as isolated numerical features, ignoring the…

Machine Learning · Computer Science 2025-11-17 Jiangkai Long , Yanran Zhu , Chang Tang , Kun Sun , Yuanyuan Liu , Xuesong Yan

Spatio-Temporal (ST) data science, which includes sensing, managing, and mining large-scale data across space and time, is fundamental to understanding complex systems in domains such as urban computing, climate science, and intelligent…

Databases · Computer Science 2025-03-19 Yuxuan Liang , Haomin Wen , Yutong Xia , Ming Jin , Bin Yang , Flora Salim , Qingsong Wen , Shirui Pan , Gao Cong

Spatial transcriptomics (ST) measures gene expression at a set of spatial locations in a tissue. Communities of nearby cells that express similar genes form \textit{spatial domains}. Specialized ST clustering algorithms have been developed…

Quantitative Methods · Quantitative Biology 2025-11-12 Perry Beamer , Zixuan Cang

Spatial transcriptomics is a modern sequencing technology that allows the measurement of the activity of thousands of genes in a tissue sample and map where the activity is occurring. This technology has enabled the study of the so-called…

Methodology · Statistics 2022-09-15 Andrea Sottosanti , Davide Risso