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Electronic health records (EHRs) hold significant value for research and applications. As a new way of information extraction, question answering (QA) can extract more flexible information than conventional methods and is more accessible to…
Understanding relationships between documents in large-scale corpora is essential for knowledge discovery and information organization. However, existing approaches rely heavily on manual annotation or predefined relationship taxonomies. We…
Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…
Entity coreference resolution is an important research problem with many applications, including information extraction and question answering. Coreference resolution for English has been studied extensively. However, there is relatively…
Electronic Health Records are large repositories of valuable clinical data, with a significant portion stored in unstructured text format. This textual data includes clinical events (e.g., disorders, symptoms, findings, medications and…
Large language models for code have achieved strong performance across diverse software analytics tasks, yet their real-world adoption remains limited by high computational demands, slow inference speeds, significant energy consumption, and…
Entity and Relation Extraction (ERE) is an important task in information extraction. Recent marker-based pipeline models achieve state-of-the-art performance, but still suffer from the error propagation issue. Also, most of current ERE…
Event relation extraction (ERE) is a critical and fundamental challenge for natural language processing. Existing work mainly focuses on directly modeling the entire document, which cannot effectively handle long-range dependencies and…
We present KPI-BERT, a system which employs novel methods of named entity recognition (NER) and relation extraction (RE) to extract and link key performance indicators (KPIs), e.g. "revenue" or "interest expenses", of companies from…
Document-level relation extraction (Doc-RE) aims to extract relations between entities across multiple sentences. Therefore, Doc-RE requires more comprehensive reasoning abilities like humans, involving complex cross-sentence interactions…
Events and entities are closely related; entities are often actors or participants in events and events without entities are uncommon. The interpretation of events and entities is highly contextually dependent. Existing work in information…
Decoding the human brain from electroencephalography (EEG) signals holds promise for understanding neurological activities. However, EEG data exhibit heterogeneity across subjects and sessions, limiting the generalization of existing…
Constructing large-scaled medical knowledge graphs can significantly boost healthcare applications for medical surveillance, bring much attention from recent research. An essential step in constructing large-scale MKG is extracting…
We present a novel end-to-end language model for joint retrieval and classification, unifying the strengths of bi- and cross- encoders into a single language model via a coarse-to-fine memory matching search procedure for learning and…
Document-level relation extraction (DocRE) poses the challenge of identifying relationships between entities within a document as opposed to the traditional RE setting where a single sentence is input. Existing approaches rely on logical…
Relation extraction is an important but challenging task that aims to extract all hidden relational facts from the text. With the development of deep language models, relation extraction methods have achieved good performance on various…
We propose a novel semiparametric model for the joint distribution of a continuous longitudinal outcome and the baseline covariates using an enriched Dirichlet process (EDP) prior. This joint model decomposes into a linear mixed model for…
The extraction of chemical-gene relations plays a pivotal role in understanding the intricate interactions between chemical compounds and genes, with significant implications for drug discovery, disease understanding, and biomedical…
Recent studies on open-domain question answering have achieved prominent performance improvement using pre-trained language models such as BERT. State-of-the-art approaches typically follow the "retrieve and read" pipeline and employ…
This paper presents a practical approach to fine-grained information extraction. Through plenty of experiences of authors in practically applying information extraction to business process automation, there can be found a couple of…