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End-to-end relation extraction (E2ERE) is an important task in information extraction, more so for biomedicine as scientific literature continues to grow exponentially. E2ERE typically involves identifying entities (or named entity…

Computation and Language · Computer Science 2023-04-05 Xuguang Ai , Ramakanth Kavuluru

Recently, the performance of Pre-trained Language Models (PLMs) has been significantly improved by injecting knowledge facts to enhance their abilities of language understanding. For medical domains, the background knowledge sources are…

Computation and Language · Computer Science 2021-08-23 Taolin Zhang , Zerui Cai , Chengyu Wang , Minghui Qiu , Bite Yang , Xiaofeng He

Although information extraction and coreference resolution appear together in many applications, most current systems perform them as ndependent steps. This paper describes an approach to integrated inference for extraction and coreference…

Machine Learning · Computer Science 2012-07-19 Ben Wellner , Andrew McCallum , Fuchun Peng , Michael Hay

In this study, we introduce ExBEHRT, an extended version of BEHRT (BERT applied to electronic health records), and apply different algorithms to interpret its results. While BEHRT considers only diagnoses and patient age, we extend the…

Machine Learning · Computer Science 2023-08-14 Maurice Rupp , Oriane Peter , Thirupathi Pattipaka

To solve the problem of redundant information and overlapping relations of the entity and relation extraction model, we propose a joint extraction model. This model can directly extract multiple pairs of related entities without generating…

Computation and Language · Computer Science 2020-11-30 Yuanhao Shen , Jungang Han

Document-level relation extraction aims to extract relations among entities within a document. Compared with its sentence-level counterpart, Document-level relation extraction requires inference over multiple sentences to extract complex…

Computation and Language · Computer Science 2022-08-05 Liang Zhang , Yidong Cheng

Joint entity and relation extraction plays a pivotal role in various applications, notably in the construction of knowledge graphs. Despite recent progress, existing approaches often fall short in two key aspects: richness of representation…

Computation and Language · Computer Science 2024-04-22 Urchade Zaratiana , Nadi Tomeh , Yann Dauxais , Pierre Holat , Thierry Charnois

Background : Knowledge is evolving over time, often as a result of new discoveries or changes in the adopted methods of reasoning. Also, new facts or evidence may become available, leading to new understandings of complex phenomena. This is…

Computation and Language · Computer Science 2023-04-24 Ayoub Harnoune , Maryem Rhanoui , Mounia Mikram , Siham Yousfi , Zineb Elkaimbillah , Bouchra El Asri

We introduce EXIT, an extractive context compression framework that enhances both the effectiveness and efficiency of retrieval-augmented generation (RAG) in question answering (QA). Current RAG systems often struggle when retrieval models…

Computation and Language · Computer Science 2025-05-30 Taeho Hwang , Sukmin Cho , Soyeong Jeong , Hoyun Song , SeungYoon Han , Jong C. Park

Biomedical research is growing at such an exponential pace that scientists, researchers, and practitioners are no more able to cope with the amount of published literature in the domain. The knowledge presented in the literature needs to be…

Artificial Intelligence · Computer Science 2024-07-09 Nikola Milosevic , Wolfgang Thielemann

We propose a joint event and temporal relation extraction model with shared representation learning and structured prediction. The proposed method has two advantages over existing work. First, it improves event representation by allowing…

Computation and Language · Computer Science 2020-09-17 Rujun Han , Qiang Ning , Nanyun Peng

Research in CDCR remains fragmented due to heterogeneous dataset formats, varying annotation standards, and the predominance of the CDCR definition as the event coreference resolution (ECR). To address these challenges, we introduce uCDCR,…

Computation and Language · Computer Science 2026-03-04 Anastasia Zhukova , Terry Ruas , Jan Philip Wahle , Bela Gipp

Recently BERT has been adopted for document encoding in state-of-the-art text summarization models. However, sentence-based extractive models often result in redundant or uninformative phrases in the extracted summaries. Also, long-range…

Computation and Language · Computer Science 2020-04-28 Jiacheng Xu , Zhe Gan , Yu Cheng , Jingjing Liu

Document-level relation extraction (DocRE) aims to extract semantic relations among entity pairs in a document. Typical DocRE methods blindly take the full document as input, while a subset of the sentences in the document, noted as the…

Computation and Language · Computer Science 2022-03-08 Yiqing Xie , Jiaming Shen , Sha Li , Yuning Mao , Jiawei Han

Document-level relation extraction is to extract relation facts from a document consisting of multiple sentences, in which pronoun crossed sentences are a ubiquitous phenomenon against a single sentence. However, most of the previous works…

Computation and Language · Computer Science 2022-02-23 Zhongxuan Xue , Rongzhen Li , Qizhu Dai , Zhong Jiang

Document-level Relation Extraction (RE) requires extracting relations expressed within and across sentences. Recent works show that graph-based methods, usually constructing a document-level graph that captures document-aware interactions,…

Computation and Language · Computer Science 2021-06-08 Damai Dai , Jing Ren , Shuang Zeng , Baobao Chang , Zhifang Sui

BERT-based text ranking models have dramatically advanced the state-of-the-art in ad-hoc retrieval, wherein most models tend to consider individual query-document pairs independently. In the mean time, the importance and usefulness to…

Information Retrieval · Computer Science 2021-04-20 Xiaoyang Chen , Kai Hui , Ben He , Xianpei Han , Le Sun , Zheng Ye

An exhaustive study has been conducted to investigate span-based models for the joint entity and relation extraction task. However, these models sample a large number of negative entities and negative relations during the model training,…

Computation and Language · Computer Science 2022-08-19 Bin Ji , Hao Xu , Jie Yu , Shasha Li , Jun Ma , Yuke Ji , Huijun Liu

End-to-end relation extraction aims to identify named entities and extract relations between them. Most recent work models these two subtasks jointly, either by casting them in one structured prediction framework, or performing multi-task…

Computation and Language · Computer Science 2021-03-24 Zexuan Zhong , Danqi Chen

Extracting medical knowledge from healthcare texts enhances downstream tasks like medical knowledge graph construction and clinical decision-making. However, the construction and application of knowledge extraction models lack automation,…

Artificial Intelligence · Computer Science 2023-10-05 Hongxin Ding , Peinie Zou , Zhiyuan Wang , Junfeng Zhao , Yasha Wang , Qiang Zhou