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Entity and relation extraction is the necessary step in structuring medical text. However, the feature extraction ability of the bidirectional long short term memory network in the existing model does not achieve the best effect. At the…

Computation and Language · Computer Science 2019-10-23 Kui Xue , Yangming Zhou , Zhiyuan Ma , Tong Ruan , Huanhuan Zhang , Ping He

Causal relation extraction of biomedical entities is one of the most complex tasks in biomedical text mining, which involves two kinds of information: entity relations and entity functions. One feasible approach is to take relation…

Computation and Language · Computer Science 2022-08-03 Dongling Li , Pengchao Wu , Yuehu Dong , Jinghang Gu , Longhua Qian , Guodong Zhou

Joint entity and relation extraction is the fundamental task of information extraction, consisting of two subtasks: named entity recognition and relation extraction. However, most existing joint extraction methods suffer from issues of…

Computation and Language · Computer Science 2024-03-28 Wenjun Kong , Yamei Xia

We present a joint model for entity-level relation extraction from documents. In contrast to other approaches - which focus on local intra-sentence mention pairs and thus require annotations on mention level - our model operates on entity…

Computation and Language · Computer Science 2021-12-06 Markus Eberts , Adrian Ulges

Document-level joint entity and relation extraction is a challenging information extraction problem that requires a unified approach where a single neural network performs four sub-tasks: mention detection, coreference resolution, entity…

Computation and Language · Computer Science 2023-07-25 Witold Kosciukiewicz , Mateusz Wojcik , Tomasz Kajdanowicz , Adam Gonczarek

Clinical notes contain an abundance of important but not-readily accessible information about patients. Systems to automatically extract this information rely on large amounts of training data for which their exists limited resources to…

Computation and Language · Computer Science 2020-04-23 Andriy Mulyar , Bridget T. McInnes

Compared to the general news domain, information extraction (IE) from biomedical text requires much broader domain knowledge. However, many previous IE methods do not utilize any external knowledge during inference. Due to the exponential…

Computation and Language · Computer Science 2021-06-02 Tuan Lai , Heng Ji , ChengXiang Zhai , Quan Hung Tran

Joint extraction of entities and relations is an important task in information extraction. To tackle this problem, we firstly propose a novel tagging scheme that can convert the joint extraction task to a tagging problem. Then, based on our…

Computation and Language · Computer Science 2017-06-19 Suncong Zheng , Feng Wang , Hongyun Bao , Yuexing Hao , Peng Zhou , Bo Xu

Joint extraction of entities and relations aims to detect entity pairs along with their relations using a single model. Prior work typically solves this task in the extract-then-classify or unified labeling manner. However, these methods…

Computation and Language · Computer Science 2020-02-20 Bowen Yu , Zhenyu Zhang , Xiaobo Shu , Yubin Wang , Tingwen Liu , Bin Wang , Sujian Li

In this paper, we report our method for the Information Extraction task in 2019 Language and Intelligence Challenge. We incorporate BERT into the multi-head selection framework for joint entity-relation extraction. This model extends…

Computation and Language · Computer Science 2019-09-27 Weipeng Huang , Xingyi Cheng , Taifeng Wang , Wei Chu

We consider a joint information extraction (IE) model, solving named entity recognition, coreference resolution and relation extraction jointly over the whole document. In particular, we study how to inject information from a knowledge base…

Computation and Language · Computer Science 2021-07-07 Severine Verlinden , Klim Zaporojets , Johannes Deleu , Thomas Demeester , Chris Develder

Information extraction techniques, including named entity recognition (NER) and relation extraction (RE), are crucial in many domains to support making sense of vast amounts of unstructured text data by identifying and connecting relevant…

Computation and Language · Computer Science 2024-01-17 Mingjie Li , Karin Verspoor

Joint entity-relation extraction is a critical task in transforming unstructured or semi-structured text into triplets, facilitating the construction of large-scale knowledge graphs, and supporting various downstream applications. Despite…

Computation and Language · Computer Science 2025-02-14 Danni Feng , Runzhi Li , Jing Wang , Siyu Yan , Lihong Ma , Yunli Xing

In recent years, there has been an increasing number of frameworks developed for biomedical entity and relation extraction. This research effort aims to address the accelerating growth in biomedical publications and the intricate nature of…

Computation and Language · Computer Science 2024-08-14 Minh Nguyen , Phuong Le

This study proposes a medical entity extraction method based on Transformer to enhance the information extraction capability of medical literature. Considering the professionalism and complexity of medical texts, we compare the performance…

Computation and Language · Computer Science 2025-04-08 Xiaokai Wang , Guiran Liu , Binrong Zhu , Jacky He , Hongye Zheng , Hanlu Zhang

Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…

Computation and Language · Computer Science 2020-01-01 John Giorgi , Xindi Wang , Nicola Sahar , Won Young Shin , Gary D. Bader , Bo Wang

A long-standing challenge in coreference resolution has been the incorporation of entity-level information - features defined over clusters of mentions instead of mention pairs. We present a neural network based coreference system that…

Computation and Language · Computer Science 2016-06-10 Kevin Clark , Christopher D. Manning

Document-level relation extraction (RE) aims to identify the relations between entities throughout an entire document. It needs complex reasoning skills to synthesize various knowledge such as coreferences and commonsense. Large-scale…

Computation and Language · Computer Science 2022-07-26 Xinyi Wang , Zitao Wang , Weijian Sun , Wei Hu

Generative pre-trained transformer (GPT) models have shown promise in clinical entity and relation extraction tasks because of their precise extraction and contextual understanding capability. In this work, we further leverage the Unified…

Computation and Language · Computer Science 2024-07-16 Kriti Bhattarai , Inez Y. Oh , Zachary B. Abrams , Albert M. Lai

Extracting entities and relations for types of interest from text is important for understanding massive text corpora. Traditionally, systems of entity relation extraction have relied on human-annotated corpora for training and adopted an…

Computation and Language · Computer Science 2017-06-06 Xiang Ren , Zeqiu Wu , Wenqi He , Meng Qu , Clare R. Voss , Heng Ji , Tarek F. Abdelzaher , Jiawei Han
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