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Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized…

Quantitative Methods · Quantitative Biology 2023-07-19 Joshua Pickard , Can Chen , Rahmy Salman , Cooper Stansbury , Sion Kim , Amit Surana , Anthony Bloch , Indika Rajapakse

Vertical bars, horizontal bars, dot, scatter, and line plots provide a diverse set of visualizations to represent data. To understand these plots, one must be able to recognize textual components, locate data points in a plot, and process…

Computer Vision and Pattern Recognition · Computer Science 2023-06-21 Brendan Artley

Grid infrastructures that have provided wide integrated use of resources are becoming the de-facto computing platform for solving large-scale problems in science, engineering and commerce. In this evolution, desktop grid technologies allow…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-03-14 Alireza Poshtkohi , Ali Haj Abutalebi , Shaahin Hessabi

We introduce Hoop Diagrams, a new visualization technique for set data. Hoop Diagrams are a circular visualization with hoops representing sets and sectors representing set intersections. We present an interactive tool for drawing Hoop…

Parallel coordinate plots (PCP) are a useful tool in exploratory data analysis of high-dimensional numerical data. The use of PCPs is limited when working with categorical variables or a mix of categorical and continuous variables. In this…

Graphics · Computer Science 2020-09-29 Yawei Ge , Heike Hofmann

Autoplot is software developed for the Virtual Observatories in Heliophysics to provide intelligent and automated plotting capabilities for many typical data products that are stored in a variety of file formats or databases. Autoplot has…

Graphics · Computer Science 2010-04-15 J. Faden , R. S. Weigel , J. Merka , R. H. W. Friedel

This elementary review covers the basics of working with astronomical data, notably with images, spectra and higher-level (catalog) data. The basic concepts and tools are presented using both application software (DS9 and TOPCAT) and…

Instrumentation and Methods for Astrophysics · Physics 2020-01-09 Markus Pössel

A visualisation tool is presented to facilitate the study on large-scale communications networks. This tool provides a simple and effective way to summarise the topology of a complex network at a coarse level.

Networking and Internet Architecture · Computer Science 2009-09-29 Yuchun Guo , Changjia Chen , Shi Zhou

This paper presents an open-source curatorial toolkit intended to produce well-structured and interoperable data. Curation is divided into discrete components, with a schema-centric focus for auditable restructuring of complex and scattered…

Databases · Computer Science 2024-09-04 Gavin Chait

This paper describes the design and functionality of ConvoKit, an open-source toolkit for analyzing conversations and the social interactions embedded within. ConvoKit provides an unified framework for representing and manipulating…

Computation and Language · Computer Science 2020-05-12 Jonathan P. Chang , Caleb Chiam , Liye Fu , Andrew Z. Wang , Justine Zhang , Cristian Danescu-Niculescu-Mizil

A distributed semantic graph processing system that provides locality control, indexing, graph query, and parallel processing capabilities is presented.

Distributed, Parallel, and Cluster Computing · Computer Science 2017-08-18 Cetin Savkli , Ryan Carr , Matthew Chapman , Brant Chee , David Minch

We introduce giotto-tda, a Python library that integrates high-performance topological data analysis with machine learning via a scikit-learn-compatible API and state-of-the-art C++ implementations. The library's ability to handle various…

With the continuous increase in the computational power and resources of modern high-performance computing (HPC) systems, large-scale ensemble simulations have become widely used in various fields of science and engineering, and especially…

Human-Computer Interaction · Computer Science 2022-09-23 Keita Watanabe , Naohisa Sakamoto , Jorji Nonaka , Yasumitsu Maejima

Jupyter Scatter is a scalable, interactive, and interlinked scatterplot widget for exploring datasets in Jupyter Notebook/Lab, Colab, and VS Code. Its goal is to simplify the visual exploration, analysis, and comparison of large-scale…

Human-Computer Interaction · Computer Science 2024-06-24 Fritz Lekschas , Trevor Manz

Scatterplots are one of the simplest and most commonly-used visualizations for understanding quantitative, multidimensional data. However, since scatterplots only depict two attributes at a time, analysts often need to manually generate and…

Human-Computer Interaction · Computer Science 2019-07-30 Doris Jung-Lin Lee , Jaewoo Kim , Renxuan Wang , Aditya Parameswaran

We introduce geoplotlib, an open-source python toolbox for visualizing geographical data. geoplotlib supports the development of hardware-accelerated interactive visualizations in pure python, and provides implementations of dot maps,…

Graphics · Computer Science 2016-08-08 Andrea Cuttone , Sune Lehmann , Jakob Eg Larsen

Scatterplots are a common tool for exploring multidimensional datasets, especially in the form of scatterplot matrices (SPLOMs). However, scatterplots suffer from overplotting when categorical variables are mapped to one or two axes, or the…

Human-Computer Interaction · Computer Science 2025-11-18 Deokgun Park , Sung-Hee Kim , Niklas Elmqvist

Categorical data, wherein a numerical quantity is assigned to each category (nominal variable), are ubiquitous in data science. A palette diagram is a visualization tool for a large number of categorical datasets, each comprising several…

Databases · Computer Science 2020-11-05 Chihiro Noguchi , Tatsuro Kawamoto

Boxplots and related visualization methods are widely used exploratory tools for taking a first look at collections of univariate variables. In this note an extension is provided that is specifically designed to detect and display…

Methodology · Statistics 2026-05-05 Camille M. Montalcini , Peter J. Rousseeuw

Scatterplots are among the most widely used visualization techniques. Compelling scatterplot visualizations improve understanding of data by leveraging visual perception to boost awareness when performing specific visual analytic tasks.…

Human-Computer Interaction · Computer Science 2022-07-08 Ghulam Jilani Quadri , Jennifer Adorno Nieves , Brenton M. Wiernik , Paul Rosen