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Hypergraph Analysis Toolbox for Chromosome Conformation

Quantitative Methods 2023-07-19 v2
Authors: Joshua Pickard , Can Chen , Rahmy Salman , Cooper Stansbury , Sion Kim , Amit Surana , Anthony Bloch , Indika Rajapakse
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Abstract

Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.

Keywords

computational biology software and tools gene expression analysis

Cite

@article{arxiv.2211.11166,
  title  = {Hypergraph Analysis Toolbox for Chromosome Conformation},
  author = {Joshua Pickard and Can Chen and Rahmy Salman and Cooper Stansbury and Sion Kim and Amit Surana and Anthony Bloch and Indika Rajapakse},
  journal= {arXiv preprint arXiv:2211.11166},
  year   = {2023}
}

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