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Catalysis, the acceleration of chemical reactions by molecules that are not consumed in the process, is essential to living organisms but currently absent in physical systems that aspire to emulate biological functionalities with artificial…

Soft Condensed Matter · Physics 2022-11-23 Maitane Muñoz-Basagoiti , Olivier Rivoire , Zorana Zeravcic

We investigate catalysis in the framework of elementary thermal operations, leveraging the distinct features of such operations to illuminate catalytic dynamics. As groundwork, we establish new technical tools that enhance the computability…

Quantum Physics · Physics 2024-03-27 Jeongrak Son , Nelly H. Y. Ng

Catalysis lies at the heart of chemical reactivity, yet its foundational principles remain fragmented across the distinct domains of homogeneous, heterogeneous, and enzymatic systems Here, we propose a unifying theoretical model that…

Chemical Physics · Physics 2025-05-05 Frank Nelson Crespilho

In chemistry, a catalyst is a substance which enables a chemical reaction or increases its rate, while remaining unchanged in the process. Instead of chemical reactions, quantum catalysis enhances our ability to convert quantum states into…

Quantum Physics · Physics 2024-04-16 Chandan Datta , Tulja Varun Kondra , Marek Miller , Alexander Streltsov

Autocatalysis is a fundamental concept, used in a wide range of domains. From the most general definition of autocatalysis, that is a process in which a chemical compound is able to catalyze its own formation, several different systems can…

Biomolecules · Quantitative Biology 2011-10-05 Raphaël Plasson , Axel Brandenburg , Ludovic Jullien , Hugues Bersini

Enzyme-catalysed reactions involve two distinct timescales. There is a short timescale on which enzymes bind to substrate molecules to produce bound complexes, and a comparatively long timescale on which the complex is transformed into a…

Quantitative Methods · Quantitative Biology 2023-10-06 Taylor Kearney , Mark B. Flegg

Catalysts speed up chemical reactions with no energy input and without being transformed in the process, therefore leaving equilibrium constants unchanged. Some catalysts, however, are much more efficient at accelerating one direction of a…

Soft Condensed Matter · Physics 2025-06-06 Sara Mahdavi , Yann Sakref , Olivier Rivoire

Chemical reactions are usually studied under the assumption that both substrates and catalysts are well mixed (WM) throughout the system. Although this is often applicable to test-tube experimental conditions, it is not realistic in…

Statistical Mechanics · Physics 2023-02-13 Nino Lauber , Ondrej Tichacek , Krishnadev Narayanankutty , Daniele De Martino , Kepa Ruiz-Mirazo

Background: Autocatalytic sets are often considered a necessary (but not sufficient) condition for the origin and early evolution of life. Although the idea of autocatalytic sets was already conceived of many years ago, only recently have…

Molecular Networks · Quantitative Biology 2012-06-06 Wim Hordijk , Mike Steel

Understanding the fundamental limits of state convertibility is crucial for establishing the boundaries of quantum information processing and thermodynamic efficiency. While auxiliary systems, catalysts, can facilitate otherwise impossible…

Quantum Physics · Physics 2026-03-06 Jingsong Ao , Aby Philip , Alexander Streltsov

The notion of (auto) catalytic networks has become a cornerstone in understanding the possibility of a sudden dramatic increase of diversity in biological evolution as well as in the evolution of social and economical systems. Here we study…

Other Condensed Matter · Physics 2016-10-05 Rudolf Hanel , Stuart A. Kauffman , Stefan Thurner

A comparison is made between conventional Michaelis-Menten kinetics and two models that take into account the duration of the conformational changes that take place at the molecular level during the catalytic cycle of a monomer. The models…

Molecular Networks · Quantitative Biology 2007-12-05 José M. Albornoz , Antonio Parravano

Enzyme catalysis in reactors for industrial applications usually require an external intervention of the species involved in the chemical reactions. We analyze the most elementary open enzyme catalysis with competitive inhibition where a…

Dynamical Systems · Mathematics 2024-06-11 Homero G. Díaz-Marín , José L. Sánchez-Ponce

We develop a theory of enzyme catalysis within biological cells where the substrate concentration [S](t) is time dependent, in contrast to the Michaelis-Menten theory that assumes a steady state. We find that the time varying concentration…

Statistical Mechanics · Physics 2011-05-27 Biman Jana , Biman Bagchi

Phase separation is the thermodynamic process that explains how droplets form in multicomponent fluids. These droplets can provide controlled compartments to localize chemical reactions, and reactions can also affect the droplets' dynamics.…

Soft Condensed Matter · Physics 2022-09-02 David Zwicker

This study explores the transformative potential of nanocatalysts, emphasizing their pivotal role in catalysis and material science. Key synthesis techniques, including chemical reduction and hybrid methods, are highlighted for their…

Materials Science · Physics 2025-01-24 Jairo Rondón , Angel Gonzalez-Lizardo , Claudio Lugo

A system formed by a crowded environment of catalytic obstacles and complex oscillatory chemical reactions is inquired. The obstacles are static spheres of equal radius, which are placed in a random way. The chemical reactions are carried…

Chemical Physics · Physics 2018-12-05 Carlos Echeverria , José L. Herrera , Kay Tucci , Orlando Alvarez-Llamoza , Miguel Morales

The activity of catalytic materials is reduced during operation by several mechanisms, one of them being poisoning of catalytic sites by chemisorbed impurities or products. Here we study the effects of poisoning in two reaction-diffusion…

Statistical Mechanics · Physics 2015-05-13 T. G. Mattos , Fabio D. A. Aarao Reis

Every mathematical model describing physical phenomena is an approximation to model reality, hence has its limitations. Depending on characteristic values of the variables in the model, different aspects of the model and, e.g.,…

Analysis of PDEs · Mathematics 2019-12-02 Björn Augner , Dieter Bothe

We examine the stochastic dynamics of two enzymes that are mechanically coupled to each other, e.g., through an elastic substrate or a fluid medium. The enzymes undergo conformational changes during their catalytic cycle, which itself is…

Statistical Mechanics · Physics 2021-11-16 Jaime Agudo-Canalejo , Tunrayo Adeleke-Larodo , Pierre Illien , Ramin Golestanian
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