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Short-term forecasts of infectious disease spread are a critical component in risk evaluation and public health decision making. While different models for short-term forecasting have been developed, open questions about their relative…

The outbreak of the novel Coronavirus Disease (COVID-19) has greatly influenced people's daily lives across the globe. Emergent measures and policies (e.g., lockdown, social distancing) have been taken by governments to combat this highly…

Information Retrieval · Computer Science 2020-07-07 Hui Yin , Shuiqiao Yang , Jianxin Li

Numerous COVID-19 clinical decision support systems have been developed. However many of these systems do not have the merit for validity due to methodological shortcomings including algorithmic bias. Methods Logistic regression models were…

Machine Learning · Computer Science 2021-11-02 Yifan Li , Garrett Yoon , Mustafa Nasir-Moin , David Rosenberg , Sean Neifert , Douglas Kondziolka , Eric Karl Oermann

The COVID-19 pandemic has had worldwide devastating effects on human lives, highlighting the need for tools to predict its development. Dynamics of such public-health threats can often be efficiently analysed through simple models that help…

Populations and Evolution · Quantitative Biology 2021-06-04 Pedro L. de Andres , Lucia de Andres-Bragado , Linard D. Hoessly

In recent years, there has been increasing interest in developing models and tools to address the complex patterns of connectivity found in brain tissue. Specifically, this is due to a need to understand how emergent properties emerge from…

Neurons and Cognition · Quantitative Biology 2022-04-15 Sean Knight , Navjot Gadda

A susceptible-exposed-infected-removed (SEIR) model assumes spatial-/time-varying coefficients to model the effect of non-pharmaceutical interventions (NPIs) on the regional and temporal distribution of COVID-19 disease epidemics. A…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-05 Huan Zhou , Ralf Schneider

Spatiotemporal data analysis with massive zeros is widely used in many areas such as epidemiology and public health. We use a Bayesian framework to fit zero-inflated negative binomial models and employ a set of latent variables from…

Methodology · Statistics 2024-02-08 Qing He , Hsin-Hsiung Huang

Non-pharmaceutical interventions(NPIs) play an important role in the early stage control of COVID-19 pandemic. Vaccination is considered to be the inevitable course to stop the spread of SARS-CoV-2. Based on the mechanism, a SVEIR COVID-19…

Populations and Evolution · Quantitative Biology 2021-07-08 Bin-Guo Wang , Shunxiang Huang , Yongping Xiong , Ming-Zhen Xin , Jing LI , Jiangqian Zhang , Zhihui Ma

This paper introduces a dynamic panel SIR (DP-SIR) model to investigate the impact of non-pharmaceutical interventions (NPIs) on the COVID-19 transmission dynamics with panel data from 9 countries across the globe. By constructing scenarios…

Populations and Evolution · Quantitative Biology 2021-06-07 Xiaohui Chen , Ziyi Qiu

Over the past two decades there has been a number of global outbreaks of viral diseases. This has accelerated the efforts to model and forecast the disease spreading, in order to find ways to confine the spreading regionally and between…

Physics and Society · Physics 2020-07-22 Rafael A. Barrio , Kimmo K. Kaski , Gudmundur G. Haraldsson , Thor Aspelund , Tzipe Govezensky

A primary indicator of success in the fight against COVID-19 is avoiding stress on critical care infrastructure and services (CCIS). However, CCIS will likely remain stressed until sustained herd immunity is built. There are also secondary…

Computers and Society · Computer Science 2020-07-27 Ashlesha Nesarikar , Waqas Haque , Suchith Vuppala , Abhijit Nesarikar

When it came to Covid-19, timing was everything. This paper considers the spatiotemporal dynamics of the Covid-19 pandemic via a developed methodology of non-Euclidean spatially aware functional registration. In particular, the daily…

Applications · Statistics 2024-07-25 Luke A. Barratt , John A. D. Aston

Public health officials dealing with pandemics like COVID-19 have to evaluate and prepare response plans. This planning phase requires not only looking into the spatiotemporal dynamics and impact of the pandemic using simulation models, but…

Human-Computer Interaction · Computer Science 2020-10-23 Shehzad Afzal , Sohaib Ghani , Hank C. Jenkins-Smith , David S. Ebert , Markus Hadwiger , Ibrahim Hoteit

Objective: The COVID-19 pandemic has created many challenges that need immediate attention. Various epidemiological and deep learning models have been developed to predict the COVID-19 outbreak, but all have limitations that affect the…

Social and Information Networks · Computer Science 2020-12-08 Junyi Gao , Rakshith Sharma , Cheng Qian , Lucas M. Glass , Jeffrey Spaeder , Justin Romberg , Jimeng Sun , Cao Xiao

Spatiotemporal data mining (STDM) has a wide range of applications in various complex physical systems (CPS), i.e., transportation, manufacturing, healthcare, etc. Among all the proposed methods, the Convolutional Long Short-Term Memory…

Machine Learning · Computer Science 2025-11-19 Junfeng Wu , Hadjer Benmeziane , Kaoutar El Maghraoui , Liu Liu , Yinan Wang

To draw real-world evidence about the comparative effectiveness of multiple time-varying treatments on patient survival, we develop a joint marginal structural survival model and a novel weighting strategy to account for time-varying…

Methodology · Statistics 2023-08-08 Liangyuan Hu , Jiayi Ji , Himanshu Joshi , Erick Scott , Fan Li

We introduce a Bayesian approach for multivariate spatio-temporal prediction for high-dimensional count-valued data. Our primary interest is when there are possibly millions of data points referenced over different variables, geographic…

Methodology · Statistics 2015-12-24 Jonathan R. Bradley , Scott H. Holan , Christopher K. Wikle

The spread of COVID-19 during the initial phase of the first half of 2020 was curtailed to a larger or lesser extent through measures of social distancing imposed by most countries. In this work, we link directly, through machine learning…

Populations and Evolution · Quantitative Biology 2020-08-20 G. D. Barmparis , G. P. Tsironis

Measuring traffic performance is critical for public agencies who manage traffic and individuals who plan trips, especially when special events happen. The COVID-19 pandemic has significantly influenced almost every aspect of daily life,…

Physics and Society · Physics 2020-07-02 Zhiyong Cui , Meixin Zhu , Shuo Wang , Pengfei Wang , Yang Zhou , Qianxia Cao , Cole Kopca , Yinhai Wang