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Message passing neural networks (MPNNs) learn the representation of graph-structured data based on graph original information, including node features and graph structures, and have shown astonishing improvement in node classification…

Machine Learning · Computer Science 2023-01-30 Xiao Liu , Lijun Zhang , Hui Guan

Simplicial complexes capture the underlying network topology and geometry of complex systems ranging from the brain to social networks. Here we show that algebraic topology is a fundamental tool to capture the higher-order dynamics of…

Disordered Systems and Neural Networks · Physics 2021-07-12 Reza Ghorbanchian , Juan G. Restrepo , Joaquín J. Torres , Ginestra Bianconi

Topological data analysis can reveal higher-order structure beyond pairwise connections between vertices in complex networks. We present a new method based on discrete Morse theory to study topological properties of unweighted and…

Discrete Mathematics · Computer Science 2019-10-01 Harish Kannan , Emil Saucan , Indrava Roy , Areejit Samal

Conventional approaches to learning on graphs involve message passing along existing (i.e., positive) edges to update node features. However, these approaches often disregard the potentially valuable information contained in the absence…

Machine Learning · Computer Science 2026-05-19 Peter Pao-Huang , Charilaos I. Kanatsoulis , Michael Bereket , Jure Leskovec

Thresholding--the pruning of nodes or edges based on their properties or weights--is an essential preprocessing tool for extracting interpretable structure from complex network data, yet existing methods face several key limitations.…

Social and Information Networks · Computer Science 2025-10-07 Adam Schroeder , Russell Funk , Jingyi Guan , Taylor Okonek , Lori Ziegelmeier

Constructing appropriate representations of molecules lies at the core of numerous tasks such as material science, chemistry and drug designs. Recent researches abstract molecules as attributed graphs and employ graph neural networks (GNN)…

Machine Learning · Computer Science 2021-07-29 Jianwen Chen , Shuangjia Zheng , Ying Song , Jiahua Rao , Yuedong Yang

Neural networks encode inputs as high-dimensional vectors, known as representations, that capture how models process data by encoding task-relevant structure and semantics. Representation alignment refers to the degree to which different…

Computational Geometry · Computer Science 2026-05-26 Xinyuan Yan , Rita Sevastjanova , Mennatallah El-Assady , Bei Wang

Graph Neural Networks have a limitation of solely processing features on graph nodes, neglecting data on high-dimensional structures such as edges and triangles. Simplicial Convolutional Neural Networks (SCNN) represent higher-order…

Machine Learning · Computer Science 2024-10-24 Yi Yan , Ercan E. Kuruoglu

Graph neural networks (GNNs) are a powerful inductive bias for modelling algorithmic reasoning procedures and data structures. Their prowess was mainly demonstrated on tasks featuring Markovian dynamics, where querying any associated data…

Machine Learning · Computer Science 2021-04-28 Heiko Strathmann , Mohammadamin Barekatain , Charles Blundell , Petar Veličković

Achieving accurate traffic prediction is a fundamental but crucial task in the development of current intelligent transportation systems.Most of the mainstream methods that have made breakthroughs in traffic prediction rely on…

Machine Learning · Computer Science 2025-11-13 Guangyin Jin , Sicong Lai , Xiaoshuai Hao , Mingtao Zhang , Jinlei Zhang

Supervised learning on molecules has incredible potential to be useful in chemistry, drug discovery, and materials science. Luckily, several promising and closely related neural network models invariant to molecular symmetries have already…

Machine Learning · Computer Science 2017-06-14 Justin Gilmer , Samuel S. Schoenholz , Patrick F. Riley , Oriol Vinyals , George E. Dahl

Graphs are the most ubiquitous data structures for representing relational datasets and performing inferences in them. They model, however, only pairwise relations between nodes and are not designed for encoding the higher-order relations.…

Machine Learning · Computer Science 2021-09-23 Devanshu Arya , Deepak K. Gupta , Stevan Rudinac , Marcel Worring

Higher order networks are able to characterize data as different as functional brain networks, protein interaction networks and social networks beyond the framework of pairwise interactions. Most notably higher order networks include…

Disordered Systems and Neural Networks · Physics 2018-11-26 Daan Mulder , Ginestra Bianconi

Network-based modeling of complex systems and data using the language of graphs has become an essential topic across a range of different disciplines. Arguably, this graph-based perspective derives its success from the relative simplicity…

Social and Information Networks · Computer Science 2023-08-11 Christian Bick , Elizabeth Gross , Heather A. Harrington , Michael T. Schaub

The topological information is essential for studying the relationship between nodes in a network. Recently, Network Representation Learning (NRL), which projects a network into a low-dimensional vector space, has been shown their…

Social and Information Networks · Computer Science 2019-02-19 Guoji Fu , Chengbin Hou , Xin Yao

Existing popular methods for semi-supervised learning with Graph Neural Networks (such as the Graph Convolutional Network) provably cannot learn a general class of neighborhood mixing relationships. To address this weakness, we propose a…

Networks are frequently used to model complex systems comprised of interacting elements. While edges capture the topology of direct interactions, the true complexity of many systems originates from higher-order patterns in paths by which…

Social and Information Networks · Computer Science 2022-10-04 Christoph Gote , Vincenzo Perri , Ingo Scholtes

Simplicial complexes have recently been in the limelight of higher-order network analysis, where a minority of simplices play crucial roles in structures and functions due to network heterogeneity. We find a significant inconsistency…

Social and Information Networks · Computer Science 2023-07-13 Yujie Zeng , Yiming Huang , Qiang Wu , Linyuan Lü

Topological deep learning is a rapidly growing field that pertains to the development of deep learning models for data supported on topological domains such as simplicial complexes, cell complexes, and hypergraphs, which generalize many…

Superposition -- when a neural network represents more ``features'' than it has dimensions -- seems to pose a serious challenge to mechanistically interpreting current AI systems. Existing theory work studies \emph{representational}…

Machine Learning · Computer Science 2024-08-13 Kaarel Hänni , Jake Mendel , Dmitry Vaintrob , Lawrence Chan
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