Related papers: Suffixient Sets
Algorithms for listing the subgraphs satisfying a given property (e.g.,being a clique, a cut, a cycle, etc.) fall within the general framework of set systems. A set system (U, F) uses a ground set U (e.g., the network nodes) and an…
Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…
A dynamic coloring of the vertices of a graph $G$ starts with an initial subset $S$ of colored vertices, with all remaining vertices being non-colored. At each discrete time interval, a colored vertex with exactly one non-colored neighbor…
A dominating set $S$ of a graph is a metric-locating-dominating set if each vertex of the graph is uniquely distinguished by its distances from the elements of $S$, and the minimum cardinality of such a set is called the…
A dominating set of a graph $G$ is a set of vertices $D$ such that for all $v \in V(G)$, either $v \in D$ or $(v,d) \in E(G)$ for some $d \in D$. The cardinality redundance of a vertex set $S$, $CR(S)$, is the number of vertices in $V(G)$…
Given a text $T$ of length $n$, we propose a deterministic online algorithm computing the sparse suffix array and the sparse longest common prefix array of $T$ in $O(c \sqrt{\lg n} + m \lg m \lg n \lg^* n)$ time with $O(m)$ words of space…
A set of vertices $S$ of a graph $G$ is a (geodesic)convex set, if $S$ contains all the vertices belonging to any shortest path connecting between two vertices of $S$. The cardinality of maximum proper convex set of $G$ is called the…
A matching is compatible to two or more labeled point sets of size $n$ with labels $\{1,\dots,n\}$ if its straight-line drawing on each of these point sets is crossing-free. We study the maximum number of edges in a matching compatible to…
An $(r, s)$-formation is a concatenation of $s$ permutations of $r$ letters. If $u$ is a sequence with $r$ distinct letters, then let $\mathit{Ex}(u, n)$ be the maximum length of any $r$-sparse sequence with $n$ distinct letters which has…
A set $S$ of vertices in a graph $G(V,E)$ is called a dominating set if every vertex $v\in V$ is either an element of $S$ or is adjacent to an element of $S$. A set $S$ of vertices in a graph $G(V,E)$ is called a total dominating set if…
A graph $G$ is $D$-distinguishable if there is a labeling of its vertices with $D$ labels such that the only automorphism of $G$ which preserves the labeling is the identity. The distinguishing number of $G$ is the minimum value $D$ for…
The Suffix Array is a classic text index enabling on-line pattern matching queries via simple binary search. The main drawback of the Suffix Array is that it takes linear space in the text's length, even if the text itself is extremely…
A subset $M$ of the edges of a graph $G$ is a matching if no two edges in $M$ are incident. A maximal matching is a matching that is not contained in a larger matching. A subset $S$ of vertices of a graph $G$ with no isolated vertices is a…
An independent edge set of graph $G$ is a matching, and is maximal if it is not a proper subset of any other matching of $G$. The number of all the maximal matchings of $G$ is denoted by $\Psi(G)$. In this paper, an algorithm to count…
We introduce a compressed suffix array representation that, on a text $T$ of length $n$ over an alphabet of size $\sigma$, can be built in $O(n)$ deterministic time, within $O(n\log\sigma)$ bits of working space, and counts the number of…
The suffix tree is arguably the most fundamental data structure on strings: introduced by Weiner (SWAT 1973) and McCreight (JACM 1976), it allows solving a myriad of computational problems on strings in linear time. Motivated by its large…
An \itbf{indeterminate string} (or, more simply, just a \itbf{string}) $\s{x} = \s{x}[1..n]$ on an alphabet $\Sigma$ is a sequence of nonempty subsets of $\Sigma$. We say that $\s{x}[i_1]$ and $\s{x}[i_2]$ \itbf{match} (written $\s{x}[i_1]…
In this paper we study the structure of suffix trees. Given an unlabeled tree $\tau$ on $n$ nodes and suffix links of its internal nodes, we ask the question "Is $\tau$ a suffix tree?", i.e., is there a string $S$ whose suffix tree has the…
The fixing number of a graph $G$ is the order of the smallest subset $S$ of its vertex set $V(G)$ such that stabilizer of $S$ in $G$, $\Gamma_{S}(G)$ is trivial. Let $G_{1}$ and $G_{2}$ be disjoint copies of a graph $G$, and let…
The notions of synchronizing and partitioning sets are recently introduced variants of locally consistent parsings with great potential in problem-solving. In this paper we propose a deterministic algorithm that constructs for a given…