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Late diagnosis and high costs are key factors that negatively impact the care of cancer patients worldwide. Although the availability of biological markers for the diagnosis of cancer type is increasing, costs and reliability of tests…

Machine Learning · Computer Science 2019-08-20 Sterling Ramroach , Melford John , Ajay Joshi

As hashing becomes an increasingly appealing technique for large-scale image retrieval, multi-label hashing is also attracting more attention for the ability to exploit multi-level semantic contents. In this paper, we propose a novel deep…

Computer Vision and Pattern Recognition · Computer Science 2021-02-03 Cheng Ma , Jiwen Lu , Jie Zhou

Matrix factorization has been recently utilized for the task of multi-modal hashing for cross-modality visual search, where basis functions are learned to map data from different modalities to the same Hamming embedding. In this paper, we…

Information Retrieval · Computer Science 2016-04-19 Hong Liu , Rongrong Ji , Yongjian Wu , Gang Hua

Single-cell RNA sequencing (scRNA-seq) data analysis is pivotal for understanding cellular heterogeneity. However, the high sparsity and complex noise patterns inherent in scRNA-seq data present significant challenges for traditional…

Genomics · Quantitative Biology 2024-08-13 Wenwen Min , Zhen Wang , Fangfang Zhu , Taosheng Xu , Shunfang Wang

We propose a novel system for active semi-supervised feature-based action recognition. Given time sequences of features tracked during movements our system clusters the sequences into actions. Our system is based on encoder-decoder…

Computer Vision and Pattern Recognition · Computer Science 2020-06-15 Jingyuan Li , Eli Shlizerman

The present survey provides the state-of-the-art of research, copiously devoted to Evolutionary Approach (EAs) for clustering exemplified with a diversity of evolutionary computations. The Survey provides a nomenclature that highlights some…

Neural and Evolutionary Computing · Computer Science 2013-12-10 Ramachandra Rao Kurada , Dr. K Karteeka Pavan , Dr. AV Dattareya Rao

Over the last decade, a large variety of clustering algorithms have been developed to detect coregulatory relationships among genes from microarray gene expression data. Model based clustering approaches have emerged as statistically well…

Quantitative Methods · Quantitative Biology 2008-01-15 Anagha Joshi , Yves Van de Peer , Tom Michoel

The task of clustering unlabeled time series and sequences entails a particular set of challenges, namely to adequately model temporal relations and variable sequence lengths. If these challenges are not properly handled, the resulting…

Machine Learning · Statistics 2019-02-19 Daniel J. Trosten , Andreas S. Strauman , Michael Kampffmeyer , Robert Jenssen

This paper concerns the critical decision process of extracting or selecting the features before applying a clustering algorithm. It is not obvious to evaluate the importance of the features since the most popular methods to do it are…

Machine Learning · Computer Science 2021-11-23 Jean-Sebastien Dessureault , Daniel Massicotte

Hashing method maps similar data to binary hashcodes with smaller hamming distance, which has received a broad attention due to its low storage cost and fast retrieval speed. With the rapid development of deep learning, deep hashing methods…

Computer Vision and Pattern Recognition · Computer Science 2019-02-05 Shifeng Zhang , Jianmin Li , Bo Zhang

Cluster analysis methods are used to identify homogeneous subgroups in a data set. In biomedical applications, one frequently applies cluster analysis in order to identify biologically interesting subgroups. In particular, one may wish to…

Methodology · Statistics 2016-09-23 Sheila Gaynor , Eric Bair

Fast accumulation of large amounts of complex data has created a need for more sophisticated statistical methodologies to discover interesting patterns and better extract information from these data. The large scale of the data often…

Methodology · Statistics 2014-09-09 Yuliya Marchetti , Qing Zhou

Heterogeneous information networks (HINs) with rich semantics are ubiquitous in real-world applications. For a given HIN, many reasonable clustering results with distinct semantic meaning can simultaneously exist. User-guided clustering is…

Social and Information Networks · Computer Science 2019-09-24 Yu Shi , Xinwei He , Naijing Zhang , Carl Yang , Jiawei Han

Phylogenetic inference can potentially result in a more accurate tree using data from multiple loci. However, if the loci are incongruent--due to events such as incomplete lineage sorting or horizontal gene transfer--it can be misleading to…

Populations and Evolution · Quantitative Biology 2016-03-10 Kevin Gori , Tomasz Suchan , Nadir Alvarez , Nick Goldman , Christophe Dessimoz

Seeding then expanding is a commonly used scheme to discover overlapping communities in a network. Most seeding methods are either too complex to scale to large networks or too simple to select high-quality seeds, and the non-principled…

Social and Information Networks · Computer Science 2015-02-27 Changxing Shang , Shengzhong Feng , Zhongying Zhao , Jianping Fan

A general framework for dealing with both linear regression and clustering problems is described. It includes Gaussian clusterwise linear regression analysis with random covariates and cluster analysis via Gaussian mixture models with…

Methodology · Statistics 2015-10-13 Giuliano Galimberti , Annamaria Manisi , Gabriele Soffritti

This paper studies the hierarchical clustering problem, where the goal is to produce a dendrogram that represents clusters at varying scales of a data set. We propose the ParChain framework for designing parallel hierarchical agglomerative…

Data Structures and Algorithms · Computer Science 2022-02-15 Shangdi Yu , Yiqiu Wang , Yan Gu , Laxman Dhulipala , Julian Shun

Correlation clustering is a central topic in unsupervised learning, with many applications in ML and data mining. In correlation clustering, one receives as input a signed graph and the goal is to partition it to minimize the number of…

Data Structures and Algorithms · Computer Science 2021-06-17 Vincent Cohen-Addad , Silvio Lattanzi , Slobodan Mitrović , Ashkan Norouzi-Fard , Nikos Parotsidis , Jakub Tarnawski

The data preprocessing stage is crucial in clustering. Features may describe entities using different scales. To rectify this, one usually applies feature normalisation aiming at rescaling features so that none of them overpowers the others…

Machine Learning · Computer Science 2021-04-26 Renato Cordeiro de Amorim , Vladimir Makarenkov

Scalar field comparison is a fundamental task in scientific visualization. In topological data analysis, we compare topological descriptors of scalar fields -- such as persistence diagrams and merge trees -- because they provide succinct…

Computational Geometry · Computer Science 2024-09-18 Weiran Lyu , Raghavendra Sridharamurthy , Jeff M. Phillips , Bei Wang
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