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In a variety of applications, we need to keep track of the development of a data set over time. For maintaining and querying this multi version data I/O-efficiently, external memory data structures are required. In this paper, we present a…

General Literature · Computer Science 2007-05-23 Saju Jude Dominic , G. Sajith

Multicopy search structures such as log-structured merge (LSM) trees are optimized for high insert/update/delete (collectively known as upsert) performance. In such data structures, an upsert on key $k$, which adds $(k,v)$ where $v$ can be…

Programming Languages · Computer Science 2021-09-14 Nisarg Patel , Siddharth Krishna , Dennis Shasha , Thomas Wies

The search for similar genetic sequences is one of the main bioinformatics tasks. The genetic sequences data banks are growing exponentially and the searching techniques that use linear time are not capable to do the search in the required…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-13 Felipe Albrecht

A Unitychain is a novel blockchain-like structure that drastically improves transaction scalability and security while maintaining ongoing network performance, even if participating nodes are required to perform a new Distributed Key…

Cryptography and Security · Computer Science 2021-01-22 Joshua D. Tobkin

A buffer k-d tree is a k-d tree variant for massively-parallel nearest neighbor search. While providing valuable speed-ups on modern many-core devices in case both a large number of reference and query points are given, buffer k-d trees are…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-10 Fabian Gieseke , Cosmin Eugen Oancea , Ashish Mahabal , Christian Igel , Tom Heskes

There is increasing interest in using multicore processors to accelerate stream processing. For example, indexing sliding window content to enhance the performance of streaming queries is greatly improved by utilizing the computational…

Databases · Computer Science 2019-03-04 Amirhesam Shahvarani , Hans-Arno Jacobsen

We study Merkle-DAGs as a transport and persistence layer for Conflict-Free Replicated Data Types (CRDTs), coining the term Merkle-CRDTs and providing an overview of the different concepts, properties, advantages and limitations involved.…

Networking and Internet Architecture · Computer Science 2020-04-29 Hector Sanjuan , Samuli Poyhtari , Pedro Teixeira , Ioannis Psaras

This paper presents the first implementation of a search tree data structure in an asynchronous shared-memory system that provides a wait-free algorithm for executing range queries on the tree, in addition to non-blocking algorithms for…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-15 Panagiota Fatourou , Eric Ruppert

Blockchain has received tremendous attention in non-monetary applications including the Internet of Things (IoT) due to its salient features including decentralization, security, auditability, and anonymity. Most conventional blockchains…

Cryptography and Security · Computer Science 2020-05-20 Ali Dorri , Raja Jurdak

Augmenting an existing sequential data structure with extra information to support greater functionality is a widely used technique. For example, search trees are augmented to build sequential data structures like order-statistic trees,…

Data Structures and Algorithms · Computer Science 2024-05-20 Panagiota Fatourou , Eric Ruppert

Attack trees are a popular way to represent and evaluate potential security threats on systems or infrastructures. The goal of this work is to provide a framework allowing to express and check whether an attack tree is consistent with the…

Cryptography and Security · Computer Science 2018-02-12 Maxime Audinot , Sophie Pinchinat , Barbara Kordy

Supertree construction is the process by which a set of phylogenetic trees, each on a subset of the overall set X of species, is combined into a tree on the full set S. The traditional use of supertree methods is the assembly of a large…

Populations and Evolution · Quantitative Biology 2018-05-10 Tandy Warnow

Processing graphs with temporal information (the temporal graphs) has become increasingly important in the real world. In this paper, we study efficient solutions to temporal graph applications using new algorithms for Incremental Minimum…

Data Structures and Algorithms · Computer Science 2025-05-13 Xiangyun Ding , Yan Gu , Yihan Sun

Attack Trees are a graphical model of security used to study threat scenarios. While visually appealing and supported by solid theories and effective tools, one of their main drawbacks remains the amount of effort required by security…

Cryptography and Security · Computer Science 2024-09-13 Alyzia-Maria Konsta , Gemma Di Federico , Alberto Lluch Lafuente , Andrea Burattin

Hierarchical structure is ubiquitous in data across many domains. There are many hierarchical clustering methods, frequently used by domain experts, which strive to discover this structure. However, most of these methods limit discoverable…

Machine Learning · Computer Science 2012-03-19 Charles Blundell , Yee Whye Teh , Katherine A. Heller

Various modifications of decision trees have been extensively used during the past years due to their high efficiency and interpretability. Tree node splitting based on relevant feature selection is a key step of decision tree learning, at…

Machine Learning · Computer Science 2017-09-05 Dmitry Ignatov , Andrey Ignatov

The construction of cut trees (also known as Gomory-Hu trees) for a given graph enables the minimum-cut size of the original graph to be obtained for any pair of vertices. Cut trees are a powerful back-end for graph management and mining,…

Data Structures and Algorithms · Computer Science 2016-09-29 Takuya Akiba , Yoichi Iwata , Yosuke Sameshima , Naoto Mizuno , Yosuke Yano

A recent work shows how we can optimize a tree based mode of operation for a hash function where the sizes of input message blocks and digest are the same, subject to the constraint that the involved tree structure has all its leaves at the…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-28 Kevin Atighehchi

Suffix trees are a fundamental data structure in stringology, but their space usage, though linear, is an important problem for its applications. We design and implement a new compressed suffix tree targeted to highly repetitive texts, such…

Data Structures and Algorithms · Computer Science 2019-02-12 Manuel Cáceres , Gonzalo Navarro

This paper details a data structure for managing and scheduling requests for computing resources of clusters and virtualised infrastructure such as private clouds. The data structure uses a red-black tree whose nodes represent the start…

Data Structures and Algorithms · Computer Science 2015-04-06 Marcos Dias de Assuncao