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The supertree problem asking for a tree displaying a set of consistent input trees has been largely considered for the reconstruction of species trees. Here, we rather explore this framework for the sake of reconstructing a gene tree from a…

Data Structures and Algorithms · Computer Science 2016-10-25 Manuel Lafond , Cédric Chauve , Nadia El-Mabrouk , Aïda Ouangraoua

In emerging applications such as blockchains and collaborative data analytics, there are strong demands for data immutability, multi-version accesses, and tamper-evident controls. This leads to three new index structures for immutable data,…

Databases · Computer Science 2020-03-11 Cong Yue , Zhongle Xie , Meihui Zhang , Gang Chen , Beng Chin Ooi , Sheng Wang , Xiaokui Xiao

The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…

Machine Learning · Computer Science 2021-02-02 Thibaut Vidal , Toni Pacheco , Maximilian Schiffer

The kernel method is a potential approach to analyzing structured data such as sequences, trees, and graphs; however, unordered trees have not been investigated extensively. Kimura et al. (2011) proposed a kernel function for unordered…

Data Structures and Algorithms · Computer Science 2012-06-22 Daisuke Kimura , Hisashi Kashima

Trees are fundamental data structure for many areas of computer science and system engineering. In this report, we show how to ensure eventual consistency of optimistically replicated trees. In optimistic replication, the different replicas…

Data Structures and Algorithms · Computer Science 2012-01-10 Stéphane Martin , Mehdi Ahmed-Nacer , Pascal Urso

Replicated tree data structures are extensively used in collaborative applications and distributed file systems, where clients often perform move operations. Local move operations at different replicas may be safe. However, remote move…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-22 Parwat Singh Anjana , Adithya Rajesh Chandrassery , Sathya Peri

Deep research agents, which synthesize information across diverse sources, are significantly constrained by the sequential nature of reasoning. This bottleneck results in high latency, poor runtime adaptability, and inefficient resource…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-31 Lunyiu Nie , Nedim Lipka , Ryan A. Rossi , Swarat Chaudhuri

Containerization simplifies the sharing and deployment of applications when environments change in the software delivery chain. To deploy an application, container delivery methods push and pull container images. These methods operate on…

Databases · Computer Science 2021-04-07 Yuta Nakamura , Raza Ahmad , Tanu Malik

Net-trees are a general purpose data structure for metric data that have been used to solve a wide range of algorithmic problems. We give a simple randomized algorithm to construct net-trees on doubling metrics using $O(n\log n)$ time in…

Computational Geometry · Computer Science 2018-09-06 Mahmoodreza Jahanseir , Donald R. Sheehy

This paper focuses on parallel hash functions based on tree modes of operation for an inner Variable-Input-Length function. This inner function can be either a single-block-length (SBL) and prefix-free MD hash function, or a sponge-based…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-13 Kevin Atighehchi , Robert Rolland

Machine learning has an emerging critical role in high-performance computing to modulate simulations, extract knowledge from massive data, and replace numerical models with efficient approximations. Decision forests are a critical tool…

Performance · Computer Science 2018-06-22 James Browne , Tyler M. Tomita , Disa Mhembere , Randal Burns , Joshua T. Vogelstein

This paper introduces new algorithms and data structures for quick counting for machine learning datasets. We focus on the counting task of constructing contingency tables, but our approach is also applicable to counting the number of…

Artificial Intelligence · Computer Science 2009-09-25 A. Moore , M. S. Lee

This paper studies known indexing structures from a new point of view: minimisation of data exchange between an IoT device acting as a blockchain client and the blockchain server running a protocol suite that includes two Guy Fawkes…

Cryptography and Security · Computer Science 2024-04-05 Alex Shafarenko

The wavelet tree (Grossi et al. [SODA, 2003]) and wavelet matrix (Claude et al. [Inf. Syst., 47:15--32, 2015]) are compact indices for texts over an alphabet $[0,\sigma)$ that support rank, select and access queries in $O(\lg \sigma)$ time.…

Data Structures and Algorithms · Computer Science 2017-11-13 Johannes Fischer , Florian Kurpicz , Marvin Löbel

Tree-based data structures are ubiquitous across applications. Therefore, a multitude of different tree implementations exist. However, while these implementations are diverse, they share a tree structure as the underlying data structure.…

Hardware Architecture · Computer Science 2025-01-30 Daniel Biebert , Christian Hakert , Jian-Jia Chen

Merge trees are fundamental structures in topological data analysis. Interleaving distance is a widely accepted metric for comparing merge trees, with applications in visualization and scientific computing. While a greedy algorithm exists…

Computational Geometry · Computer Science 2025-09-22 Elena Farahbakhsh Touli , Talha Bin Masood

Blockchain technology is ushering in another break-out year, the challenge of blockchain still remains to be solved. This paper analyzes the features of Bitcoin and Bitcoin-NG system based on blockchain, proposes an improved method of…

Cryptography and Security · Computer Science 2018-11-01 Jia Kan , Shangzhe Chen , Xin Huang

Index structures are one of the most important tools that DBAs leverage to improve the performance of analytics and transactional workloads. However, building several indexes over large datasets can often become prohibitive and consume…

Databases · Computer Science 2020-03-26 Alex Galakatos , Michael Markovitch , Carsten Binnig , Rodrigo Fonseca , Tim Kraska

The Deposit Smart Contract (DSC) is an instrumental component of the Ethereum 2.0 Phase 0 infrastructure. We have developed the first machine-checkable version of the incremental Merkle tree algorithm used in the DSC. We present our new and…

Logic in Computer Science · Computer Science 2021-09-01 Franck Cassez

Efficient discovery of frequent itemsets in large datasets is a crucial task of data mining. In recent years, several approaches have been proposed for generating high utility patterns, they arise the problems of producing a large number of…

Databases · Computer Science 2012-12-04 B. Adinarayana Reddy , O. Srinivasa Rao , M. H. M. Krishna Prasad
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