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Workflows in biomolecular science are very important as they are intricately intertwined with the scientific outcomes, as well as algorithmic and methodological innovations. The use and effectiveness of workflow tools to meet the needs of…

Software Engineering · Computer Science 2019-05-29 Levi N. Naden , Sam Ellis , Shantenu Jha

The transition to a microservices-based Flow Management Data and Services (FMDS) architecture from the existing Traffic Flow Management System (TFMS) is a critical enabler of the vision for an Information-Centric National Airspace System…

Human-Computer Interaction · Computer Science 2024-02-21 Sinan Abdulhak , Anthony Carvette , Kate Shen , Robert Goldman , Bill Tuck , Max Z. Li

With the increasing amount of data available to scientists in disciplines as diverse as bioinformatics, physics, and remote sensing, scientific workflow systems are becoming increasingly important for composing and executing scalable data…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-20 Jonathan Bader , Nils Diedrich , Lauritz Thamsen , Odej Kao

A workflow describes the entirety of processing steps in an analysis, such as employed in many fields of physics. Workflow management makes the dependencies between individual steps of a workflow and their computational requirements…

Data Analysis, Statistics and Probability · Physics 2023-09-15 Caspar Schmitt , Boyang Yu , Thomas Kuhr

Current Autonomous Scientific Research (ASR) systems, despite leveraging large language models (LLMs) and agentic architectures, remain constrained by fixed workflows and toolsets that prevent adaptation to evolving tasks and environments.…

Artificial Intelligence · Computer Science 2026-04-01 Martin Legrand , Tao Jiang , Matthieu Feraud , Benjamin Navet , Yousouf Taghzouti , Fabien Gandon , Elise Dumont , Louis-Félix Nothias

Scientific Workflow Management Systems (SWfMSs) such as Galaxy have become essential infrastructure in bioinformatics, supporting the design, execution, and sharing of complex multi-step analyses. Despite hosting hundreds of reusable…

Software Engineering · Computer Science 2025-11-04 Shamse Tasnim Cynthia , Banani Roy

In this survey, we discuss the challenges of executing scientific workflows as well as existing Machine Learning (ML) techniques to alleviate those challenges. We provide the context and motivation for applying ML to each step of the…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-28 Azita Nouri , Philip E. Davis , Pradeep Subedi , Manish Parashar

In this position paper we argue for standardizing how we share and process data in scientific workflows at the network-level to maximize step re-use and workflow portability across platforms and networks in pursuit of a foundational…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-19 Taylor Paul , William Regli

The ever growing demand for remote sensing data products by user community has resulted in many Indian and foreign remote sensing satellites being launched. The diversity in the remote sensing sensors has resulted in heterogeneous software…

Software Engineering · Computer Science 2015-09-30 Naresh Kumar Mallenahalli

The advances in data, computing and networking over the last two decades led to a shift in many application domains that includes machine learning on big data as a part of the scientific process, requiring new capabilities for integrated…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-19 Ilkay Altintas , Kyle Marcus , Isaac Nealey , Scott L. Sellars , John Graham , Dima Mishin , Joel Polizzi , Daniel Crawl , Thomas DeFanti , Larry Smarr

The collaborative efforts of large communities in science experiments, often comprising thousands of global members, reflect a monumental commitment to exploration and discovery. Recently, advanced and complex data processing has gained…

Data processing pipelines need to be executed at scales ranging from small runs up through large production data release runs resulting in millions of data products. As part of the Rubin Observatory's pipeline execution system, BPS is the…

Instrumentation and Methods for Astrophysics · Physics 2022-11-30 Michelle Gower , Mikolaj Kowalik , Nate B. Lust , James F. Bosch , Tim Jenness

Wireless sensor networks (WSNs) have many applications and are an essential part of IoT systems. The primary functionality of a WSN is gathering data from specific points that are covered with sensor nodes and transmitting the collected…

Networking and Internet Architecture · Computer Science 2022-10-13 Mustafa Can Çavdar , Ibrahim Korpeoglu , Özgür Ulusoy

Workflows specify collections of tasks that must be executed under the responsibility or supervision of human users. Workflow management systems and workflow-driven applications need to enforce security policies in the form of access…

Cryptography and Security · Computer Science 2017-06-23 Daniel Ricardo dos Santos , Silvio Ranise

Scientific experiments and modern applications are generating large amounts of data every day. Most organizations utilize In-house servers or Cloud resources to manage application data and workload. The traditional database management…

Databases · Computer Science 2025-06-17 Mayank Patel , Minal Bhise

This paper describes a vision and work in progress to elevate network resources and data transfer management to the same level as compute and storage in the context of services access, scheduling, life cycle management, and orchestration.…

Networking and Internet Architecture · Computer Science 2022-03-22 Tom Lehman , Xi Yang , Chin Guok , Frank Wuerthwein , Igor Sfiligoi , John Graham , Aashay Arora , Dima Mishin , Diego Davila , Jonathan Guiang , Tom Hutton , Harvey Newman , Justas Balcas

Scientific workflow management systems like Nextflow support large-scale data analysis by abstracting away the details of scientific workflows. In these systems, workflows consist of several abstract tasks, of which instances are run in…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-20 Jonathan Bader , Lauritz Thamsen , Svetlana Kulagina , Jonathan Will , Henning Meyerhenke , Odej Kao

Use of standards-based workflows is still somewhat unusual by high-performance computing users. In this paper we describe the experience of using the Common Workflow Language (CWL) standards to describe the execution, in parallel, of…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-25 Rupert W. Nash , Nick Brown , Michael R. Crusoe , Max Kontak

Contemporary multi-agent systems encounter persistent challenges in cross-platform interoperability, dynamic task scheduling, and efficient resource sharing. Agents with heterogeneous implementations often lack standardized interfaces;…

Artificial Intelligence · Computer Science 2025-07-08 Yuyang Cheng , Yumiao Xu , Chaojia Yu , Yong Zhao

The use of approximation is fundamental in computational science. Almost all computational methods adopt approximations in some form in order to obtain a favourable cost/accuracy trade-off and there are usually many approximations that…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-06-14 Michael A. Johnston , Vassilis Vassiliadis
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