Related papers: Knot data analysis using multiscale Gauss link int…
In this chapter, we discuss applications of topological data analysis (TDA) to spatial systems. We briefly review the recently proposed level-set construction of filtered simplicial complexes, and we then examine persistent homology in two…
Topological Data Analysis (TDA) has been applied with success to solve problems across many scientific disciplines. However, in the setting of a point cloud $X$ sampled from a shape $\mathcal{S}$ of low intrinsic dimension embedded within…
Unsupervised domain adaptation (UDA) aims at exploiting related but different data sources to tackle a common task in a target domain. UDA remains a central yet challenging problem in machine learning. In this paper, we present an approach…
Persistent homology is a central tool in topological data analysis, but its application to large and noisy datasets is often limited by computational cost and the presence of spurious topological features. Noise not only increases data size…
Graph Neural Network (GNNs) based methods have recently become a popular tool to deal with graph data because of their ability to incorporate structural information. The only hurdle in the performance of GNNs is the lack of labeled data.…
Recently, topological deep learning (TDL), which integrates algebraic topology with deep neural networks, has achieved tremendous success in processing point-cloud data, emerging as a promising paradigm in data science. However, TDL has not…
Link prediction is an important learning task for graph-structured data. In this paper, we propose a novel topological approach to characterize interactions between two nodes. Our topological feature, based on the extended persistent…
Data association is at the core of many computer vision tasks, e.g., multiple object tracking, image matching, and point cloud registration. however, current data association solutions have some defects: they mostly ignore the intra-view…
Knot diagrams are among the most common visual tools in topology. Computer programs now make it possible to draw, manipulate and render them digitally, which proves to be useful in knot theory teaching and research. Still, an openly…
The predictions of mean-field electrodynamics can now be probed using direct numerical simulations of random flows and magnetic fields. When modelling astrophysical MHD, it is important to verify that such simulations are in agreement with…
This paper introduces advanced techniques of Topological Data Analysis (TDA) for unsupervised anomaly detection and customer segmentation in banking data. Using the Mapper algorithm and persistent homology, we develop unsupervised…
While persistent homology is widely used for data shape analysis, persistent commutative algebra (PCA) has seen limited adoption in machine learning and data science. Unlike persistent homology, which delivers topological invariants in the…
Single-cell RNA sequencing (scRNA-seq) is widely used to reveal heterogeneity in cells, which has given us insights into cell-cell communication, cell differentiation, and differential gene expression. However, analyzing scRNA-seq data is a…
We develop a framework for analyzing multivariate time series using topological data analysis (TDA) methods. The proposed methodology involves converting the multivariate time series to point cloud data, calculating Wasserstein distances…
We develop a quantum topological data analysis (QTDA) protocol based on the estimation of the density of states (DOS) of the combinatorial Laplacian. Computing topological features of graphs and simplicial complexes is crucial for analyzing…
One of the most important problems arising in time series analysis is that of bifurcation, or change point detection. That is, given a collection of time series over a varying parameter, when has the structure of the underlying dynamical…
Topological data analysis is a relatively new branch of machine learning that excels in studying high dimensional data, and is theoretically known to be robust against noise. Meanwhile, data objects with mixed numeric and categorical…
Deep neural networks (DNNs) are vulnerable to shortcut learning: rather than learning the intended task, they tend to draw inconclusive relationships between their inputs and outputs. Shortcut learning is ubiquitous among many failure cases…
High-dimensional reduction methods are powerful tools for describing the main patterns in big data. One of these methods is the topological data analysis (TDA), which modeling the shape of the data in terms of topological properties. This…
Physical knot classification is a challenging fine-grained recognition task in which the intended discriminative cue is rope crossing structure; however, high closed-set accuracy may still arise from low-level appearance shortcuts rather…