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Quantum-mechanical methods are widely used for understanding molecular interactions throughout biology, chemistry, and materials science. Quantum diffusion Monte Carlo (DMC) and coupled cluster with single, double, and perturbative triple…

Artificial RNA molecules with novel functionality have many applications in synthetic biology, pharmacy and white biotechnology. The de novo design of such devices using computational methods and prediction tools is a resource-efficient…

Biomolecules · Quantitative Biology 2019-05-13 Stefan Hammer , Christian Günzel , Mario Mörl , Sven Findeiß

In this research, we have been constructing a large database of molecules by {\it ab initio} calculations. Currently, we have over 1.53 million entries of 6-31G* B3LYP optimized geometries and ten excited states by 6-31+G* TDDFT…

Chemical Physics · Physics 2015-12-31 Maho Nakata

Microfluidic devices offer numerous advantages in medical applications, including the capture of single cells in microwell-based platforms for genomic analysis. As the cost of sequencing decreases, the demand for high-throughput single-cell…

Computational Engineering, Finance, and Science · Computer Science 2024-09-13 Xueying Zhao , Yan Chen , Yuefu Jiang , Amie Radenbaugh , Jamie Moskwa , Devon Jensen

Cryo-electron microscopy (cryo-EM), the subject of the 2017 Nobel Prize in Chemistry, is a technology for determining the 3-D structure of macromolecules from many noisy 2-D projections of instances of these macromolecules, whose…

Computer Vision and Pattern Recognition · Computer Science 2020-04-22 Roy R. Lederman , Joakim Andén , Amit Singer

The discovery and identification of molecules in biological and environmental samples is crucial for advancing biomedical and chemical sciences. Tandem mass spectrometry (MS/MS) is the leading technique for high-throughput elucidation of…

Machine learning has the potential to become an important tool in quantum error correction as it allows the decoder to adapt to the error distribution of a quantum chip. An additional motivation for using neural networks is the fact that…

Quantum Physics · Physics 2019-09-18 Nikolas P. Breuckmann , Xiaotong Ni

Improving the detailed understanding of the underlying properties and functions of biomolecules has recently attracted growing interest, enabled by the possibility of real-space imaging of single, intact macromolecules using Scanning…

Mesoscale and Nanoscale Physics · Physics 2026-03-10 Tim J. Seifert , Dhaneesh Kumar , Markus Etzkorn , Stephan Rauschenbach , Klaus Kern , Kelvin Anggara , Uta Schlickum

Quantum machine learning (QML) is promising for potential speedups and improvements in conventional machine learning (ML) tasks (e.g., classification/regression). The search for ideal QML models is an active research field. This includes…

Quantum Physics · Physics 2022-02-07 Mahabubul Alam , Swaroop Ghosh

This volume constitutes the proceedings of the 7th International Workshop on Physics and Computation (PC 2016). The workshop was held on the 14th of July 2016 in Manchester, UK, as a satellite workshop to UCNC 2016, the 15th International…

Emerging Technologies · Computer Science 2016-06-22 Alastair A. Abbott , Dominic C. Horsman

Molecular property prediction is essential in a variety of contemporary scientific fields, such as drug development and designing energy storage materials. Although there are many machine learning models available for this purpose, those…

Machine Learning · Computer Science 2025-06-03 Gihan Panapitiya , Peiyuan Gao , C Mark Maupin , Emily G Saldanha

The remarkable performance of convolutional neural networks (CNNs) is entangled with their huge number of uninterpretable parameters, which has become the bottleneck limiting the exploitation of their full potential. Towards network…

Computer Vision and Pattern Recognition · Computer Science 2020-08-26 Yuchao Li , Rongrong Ji , Shaohui Lin , Baochang Zhang , Chenqian Yan , Yongjian Wu , Feiyue Huang , Ling Shao

We propose a method to teach multiple large language models (LLM) to collaborate by interleaving their generations at the token level. We model the decision of which LLM generates the next token as a latent variable. By optimizing the…

Computation and Language · Computer Science 2024-08-28 Shannon Zejiang Shen , Hunter Lang , Bailin Wang , Yoon Kim , David Sontag

Molecular Vibe Coding, a paradigm where chemists interact with LLMs to generate executable programs for molecular tasks, has emerged as a flexible alternative to chemical agents with predefined tools, enabling chemists to express…

Computation and Language · Computer Science 2026-05-06 Jiatong Li , Yuxuan Ren , Weida Wang , Changmeng Zheng , Xiao-yong Wei , Qing Li , Yatao Bian

Neutrino telescopes are unrivaled tools to explore the Universe at its most extreme. The current generation of telescopes has shown that very high energy neutrinos are produced in the cosmos, even with hints of their possible origin, and…

Instrumentation and Methods for Astrophysics · Physics 2021-11-29 Elisa Resconi , P-ONE Collaboration

Molecular simulations provide a powerful means to unravel the complex relationships between network architecture and the mechanical response of polymer networks, with a particular emphasis on rupture and fracture phenomena. Although…

Soft Condensed Matter · Physics 2026-02-02 Yuichi Masubuchi , Takato Ishida , Yusuke Koide , Takashi Uneyama

Cell imaging and analysis are fundamental to biomedical research because cells are the basic functional units of life. Among different cell-related analysis, cell counting and detection are widely used. In this paper, we focus on one common…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Haoyi Liang , Aijaz Naik , Cedric L. Williams , Jaideep Kapur , Daniel S. Weller

The Multimodal Learning for Earth and Environment Workshop (MultiEarth 2023) is the second annual CVPR workshop aimed at the monitoring and analysis of the health of Earth ecosystems by leveraging the vast amount of remote sensing data that…

Computer Vision and Pattern Recognition · Computer Science 2023-06-09 Miriam Cha , Gregory Angelides , Mark Hamilton , Andy Soszynski , Brandon Swenson , Nathaniel Maidel , Phillip Isola , Taylor Perron , Bill Freeman

Quantitative analysis of cell nuclei in microscopic images is an essential yet challenging source of biological and pathological information. The major challenge is accurate detection and segmentation of densely packed nuclei in images…

Quantitative Methods · Quantitative Biology 2019-11-14 Linqing Feng , Jun Ho Song , Jiwon Kim , Soomin Jeong , Jin Sung Park , Jinhyun Kim

With the rise of service-oriented computing, applications are more and more based on coordination of autonomous services. Envisioned over largely distributed and highly dynamic platforms, expressing this coordination calls for alternative…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-15 Marin Bertier , Marko Obrovac , Cédric Tedeschi