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This paper provides an $H_2$ optimal scheme for reducing diffusively coupled second-order systems evolving over undirected networks. The aim is to find a reduced-order model that not only approximates the input-output mapping of the…

Optimization and Control · Mathematics 2021-11-18 Lanlin Yu , Xiaodong Cheng , Jacquelien M. A. Scherpen , Junlin Xiong

A recurring motif in the organization of biological tissues are networks of long, fibrillar protein strands effectively confined to cylindrical surfaces. Often, the fibers in such curved, quasi-2D geometries adopt a characteristic order:…

Biological Physics · Physics 2015-12-23 Cyril Vrusch , Cornelis Storm

Studies of random organization models of monodisperse spherical particles have shown that a hyperuniform state is achievable when the system goes through an absorbing phase transition to a critical state. Here we investigate to what extent…

Soft Condensed Matter · Physics 2019-02-20 Zheng Ma , Salvatore Torquato

Social networks affect the diffusion of information, and thus have the potential to reduce or amplify inequality in access to opportunity. We show empirically that social networks often exhibit a much larger potential for unequal diffusion…

Applications · Statistics 2022-10-21 Eaman Jahani , Dean Eckles , Alex 'Sandy' Pentland

Inspired by recent findings that generative diffusion models learn semantically meaningful representations, we use them to discover the intrinsic hierarchical structure in biomedical 3D images using unsupervised segmentation. We show that…

Computer Vision and Pattern Recognition · Computer Science 2023-10-11 Nurislam Tursynbek , Marc Niethammer

Understanding of vascular organization is a long-standing problem in quantitative biology and biophysics and is essential for the growth of large cultured tissues. Approaches are needed that (1) make predictions of optimal arteriovenous…

Tissues and Organs · Quantitative Biology 2023-08-25 James P. Hague

Two new classes of networks are introduced that resemble small-world properties. These networks are recursively constructed but retain a fixed, regular degree. They consist of a one-dimensional lattice backbone overlayed by a hierarchical…

Disordered Systems and Neural Networks · Physics 2008-05-29 S. Boettcher , B. Goncalves , H. Guclu

Microvessels -blood vessels with diameter less than 200 microns- form large, intricate networks organized into arterioles, capillaries and venules. In these networks, the distribution of flow and pressure drop is a highly interlaced…

Tissues and Organs · Quantitative Biology 2017-08-02 Paola Causin , Francesca Malgaroli

As a model of temporally evolving networks, we consider a globally coupled logistic map with variable connection weights. The model exhibits self-organization of network structure, reflected by the collective behavior of units. Structural…

Disordered Systems and Neural Networks · Physics 2009-11-07 Junji Ito , Kunihiko Kaneko

Deep Neural Networks (DNNs) have become ubiquitous in medical image processing and analysis. Among them, U-Nets are very popular in various image segmentation tasks. Yet, little is known about how information flows through these networks…

Machine Learning · Computer Science 2021-04-05 Suemin Lee , Ivan V. Bajić

We study quantum transport properties of finite periodic quasi-one-dimensional waveguides whose classical dynamics is diffusive. The system we consider is a scattering configuration, composed of a finite periodic chain of $L$ identical…

Statistical Mechanics · Physics 2012-01-18 Jaime Zuñiga Vukusich

Recent work on self-organized remodeling of vasculature in slime-mold, leaf venation systems and vessel systems in vertebrates has put forward a plethora of potential adaptation mechanisms. All these share the underlying hypothesis of a…

Biological Physics · Physics 2020-11-11 Felix Kramer , Carl D. Modes

We build an evolutionary scenario that explains how some crucial physiological constraints in the arterial network of mammals - i.e. hematocrit, vessels diameters and arterial pressure drops - could have been selected by evolution. We…

Biological Physics · Physics 2014-05-22 Baptiste Moreau , Benjamin Mauroy

The concept of hyperuniformity has been a useful tool in the study of large-scale density fluctuations in systems ranging across the natural and mathematical sciences. One can rank a large class of hyperuniform systems by their ability to…

Statistical Mechanics · Physics 2019-02-20 Timothy M. Middlemas , Frank H. Stillinger , Salvatore Torquato

Natural and man-made transport webs are frequently dominated by dense sets of nested cycles. The architecture of these networks, as defined by the topology and edge weights, determines how efficiently the networks perform their function.…

Quantitative Methods · Quantitative Biology 2016-07-27 Carl D. Modes , Marcelo O. Magnasco , Eleni Katifori

The morphology and hierarchy of the vascular systems are essential for perfusion in supporting metabolism. In human retina, one of the most energy-demanding organs, retinal circulation nourishes the entire inner retina by an intricate…

Image and Video Processing · Electrical Eng. & Systems 2024-02-16 Siyi Chen , Amir H. Kashani , Ji Yi

The influence of randomly distributed point impurities \emph{and} planar defects on the order and transport in type-II superconductors and related systems is considered theoretically. For planar defects of identical orientation the flux…

Disordered Systems and Neural Networks · Physics 2009-06-19 Aleksandra Petkovic , Thomas Nattermann

We explore the possible role of elastic mismatch between epidermis and mesophyll as a driving force for the development of leaf venation. The current prevalent 'canalization' hypothesis for the formation of veins claims that the transport…

Biological Physics · Physics 2008-05-02 M. F. Laguna , S. Bohn , E. A. Jagla

The recently introduced hierarchical regular networks HN3 and HN4 are analyzed in detail. We use renormalization group arguments to show that HN3, a 3-regular planar graph, has a diameter growing as \sqrt{N} with the system size, and random…

Disordered Systems and Neural Networks · Physics 2008-07-23 S. Boettcher , B. Goncalves , J. Azaret

Adaptive transport networks in biological and physical systems exhibit hierarchical organization, characteristic channel spacing, and robust scaling relations. Existing adaptive network models, formulated on a lattice, successfully…

Adaptation and Self-Organizing Systems · Physics 2026-05-18 Sidney Holden , Mia C. Morrell , Geoffrey Vasil , Eleni Katifori
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