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Petri Nets are an increasingly used modeling framework for the spread of disease across populations or within an individual. For example, the Susceptible-Infectious-Recovered (SIR) compartment model is foundational for population…

Other Quantitative Biology · Quantitative Biology 2025-07-02 Trevor Reckell , Bright Kwaku Manu , Beckett Sterner , Petar Jevtić , Reggie Davidrajuh

Using three-dimensional representation of confluent cell layers, we map the amorphous solid to fluid phase transition in active cell layers onto the two-dimensional (2D) site percolation universality class. Importantly, we unify two…

Soft Condensed Matter · Physics 2022-10-18 Siavash Monfared , Guruswami Ravichandran , Jose E. Andrade , Amin Doostmohammadi

Conserved directed-percolation (C-DP) and the depinning transition of a disordered elastic interface belong to the same universality class as has been proven very recently by Le Doussal and Wiese [Phys. Rev. Lett.~\textbf{114}, 110601…

Statistical Mechanics · Physics 2016-11-23 Hans-Karl Janssen , Olaf Stenull

Susceptibility governs the dynamics of contagion. The classical SIR model is one of the simplest compartmental models of contagion spread, assuming a single shared susceptibility level. However, variation in susceptibility over a population…

Populations and Evolution · Quantitative Biology 2020-09-22 Christopher Rose , Andrew J. Medford , C. Franklin Goldsmith , Tejs Vegge , Joshua Weitz , Andrew A. Peterson

We investigate the critical phenomena of the degree-ordered percolation (DOP) model on the hierarchical $(u,v)$ flower network. Using the renormalization-group like procedure, we derive the recursion relations for the percolating…

Statistical Mechanics · Physics 2014-07-01 Hyun Keun Lee , Pyoung-Seop Shim , Jae Dong Noh

The study of the Ising model from a percolation perspective has played a significant role in the modern theory of critical phenomena. We consider the celebrated square-lattice Ising model and construct percolation clusters by placing bonds,…

Statistical Mechanics · Physics 2025-09-30 Tao Chen , Jinhong Zhu , Wei Zhong , Sheng Fang , Youjin Deng

We analyze a periodically-forced dynamical system inspired by the SIR model with impulsive vaccination. We fully characterize its dynamics according to the proportion $p$ of vaccinated individuals and the time $T$ between doses. If the…

Dynamical Systems · Mathematics 2024-08-02 João P. S. Maurício de Carvalho , Alexandre A. Rodrigues

The "SOS" in the title does not refer to the international distress signal, but to "solid-on-solid" (SOS) surface growth. The catastrophic cascades are those observed by Buldyrev {\it et al.} in interdependent networks, which we…

Disordered Systems and Neural Networks · Physics 2016-02-16 Peter Grassberger

The viral load is known to be a chief predictor of the risk of transmission of infectious diseases. In this work, we investigate the role of the individuals' viral load in the disease transmission by proposing a new…

Adaptation and Self-Organizing Systems · Physics 2023-03-29 Rossella Della Marca , Nadia Loy , Andrea Tosin

In this paper we are concerned with the SIR (Susceptible-Infective-Removed) epidemic on open clusters of bond percolation on the squared lattice. For the SIR model, a susceptible vertex is infected at rate proportional to the number of…

Probability · Mathematics 2016-11-01 Xiaofeng Xue

The SIR pandemic model suffers from an unrealistic assumption: The rate of removal from the infectious class of individuals is assumed to be proportional to the number of infectious individuals. This means that a change in the rate of…

Populations and Evolution · Quantitative Biology 2021-02-23 Paul A. Reiser

Motivated by the classical Susceptible-Infected-Recovered (SIR) epidemic models proposed by Kermack and Mckendrick, we consider a class of stochastic compartmental dynamical systems with a notion of partial ordering among the compartments.…

Populations and Evolution · Quantitative Biology 2019-01-03 Wasiur R. KhudaBukhsh , Boseung Choi , Eben Kenah , Grzegorz A. Rempala

Driven quantum systems coupled to an environment typically exhibit effectively thermal behavior with relaxational dynamics near criticality. However, a different qualitative behavior might be expected in the weakly dissipative limit due to…

Quantum Gases · Physics 2021-01-15 Daniel A. Paz , Mohammad F. Maghrebi

We introduce a stochastic sandpile model where finite drive and dissipation are coupled to the activity field. The absorbing phase transition here, as expected, belongs to the directed percolation (DP) universality class. We focus on the…

Statistical Mechanics · Physics 2015-06-23 U. Basu , P. K. Mohanty

We study the contact process on spatially embedded networks, consisting of a regular square lattice with long-range connections. To generate the networks, a long-range connection is randomly added to each node $i$ of a square lattice,…

Statistical Mechanics · Physics 2018-09-26 T. B. dos Santos , C. I. N. Sampaio Filho , N. A. M. Araújo , C. L. N. Oliveira , A. A. Moreira

We study, on a square lattice, an extension to fully coordinated percolation which we call iterated fully coordinated percolation. In fully coordinated percolation, sites become occupied if all four of its nearest neighbors are also…

Statistical Mechanics · Physics 2007-05-23 E. Cuansing , H. Nakanishi

In this paper, we propose a modified susceptible-infected-recovered (SIR) model, in which each node is assigned with an identical capability of active contacts, $A$, at each time step. In contrast to the previous studies, we find that on…

Physics and Society · Physics 2007-05-23 Rui Yang , Bing-Hong Wang , Jie Ren , Wen-Jie Bai , Zhi-Wen Shi , Wen-Xu Wang , Tao Zhou

Networks of contacts capable of spreading infectious diseases are often observed to be highly heterogeneous, with the majority of individuals having fewer contacts than the mean, and a significant minority having relatively very many…

Physics and Society · Physics 2016-12-21 César Parra-Rojas , Thomas House , Alan J. McKane

In the simple mean-field SIS and SIR epidemic models, infection is transmitted from infectious to susceptible members of a finite population by independent $p-$coin tosses. Spatial variants of these models are proposed, in which finite…

Probability · Mathematics 2009-09-29 Steven P. Lalley

The interplay between local and regional processes in the dynamics of ecological communities remains a challenge to model, analyze and predict. This is especially notable in infectious diseases with multiple strains, where several layers of…

Dynamical Systems · Mathematics 2025-10-30 Sten Madec , Erida Gjini