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The exponential growth of scientific production makes secondary literature abridgements increasingly demanding. We introduce a new open-source framework for systematic reviews that significantly reduces time and workload for collecting and…

Digital Libraries · Computer Science 2022-02-24 Angelo D'Ambrosio , Hajo Grundmann , Tjibbe Donker

Medical data employed in research frequently comprises sensitive patient health information (PHI), which is subject to rigorous legal frameworks such as the General Data Protection Regulation (GDPR) or the Health Insurance Portability and…

Image and Video Processing · Electrical Eng. & Systems 2024-10-17 Moritz Rempe , Lukas Heine , Constantin Seibold , Fabian Hörst , Jens Kleesiek

In this work, we propose a novel problem formulation for de-identification of unstructured clinical text. We formulate the de-identification problem as a sequence to sequence learning problem instead of a token classification problem. Our…

Computation and Language · Computer Science 2021-09-13 Md Monowar Anjum , Noman Mohammed , Xiaoqian Jiang

Large-scale clinical data is invaluable to driving many computational scientific advances today. However, understandable concerns regarding patient privacy hinder the open dissemination of such data and give rise to suboptimal siloed…

Computation and Language · Computer Science 2019-05-23 Oren Melamud , Chaitanya Shivade

Access to medical imaging and associated text data has the potential to drive major advances in healthcare research and patient outcomes. However, the presence of Protected Health Information (PHI) and Personally Identifiable Information…

Machine Learning · Statistics 2025-08-01 Kyle Naddeo , Nikolas Koutsoubis , Rahul Krish , Ghulam Rasool , Nidhal Bouaynaya , Tony OSullivan , Raj Krish

Clinical trials are conducted to test the effectiveness and safety of potential drugs in humans for regulatory approval. Machine learning (ML) has recently emerged as a new tool to assist in clinical trials. Despite this progress, there…

Artificial Intelligence · Computer Science 2023-10-06 Zifeng Wang , Brandon Theodorou , Tianfan Fu , Cao Xiao , Jimeng Sun

Phenotyping consists in applying algorithms to identify individuals associated with a specific, potentially complex, trait or condition, typically out of a collection of Electronic Health Records (EHRs). Because a lot of the clinical…

De-identification in the healthcare setting is an application of NLP where automated algorithms are used to remove personally identifying information of patients (and, sometimes, providers). With the recent rise of generative large language…

Computation and Language · Computer Science 2025-09-19 Kiana Aghakasiri , Noopur Zambare , JoAnn Thai , Carrie Ye , Mayur Mehta , J. Ross Mitchell , Mohamed Abdalla

Sharing protected health information (PHI) is critical for furthering biomedical research. Before data can be distributed, practitioners often perform deidentification to remove any PHI contained in the text. Contemporary deidentification…

Computation and Language · Computer Science 2024-10-23 John X. Morris , Thomas R. Campion , Sri Laasya Nutheti , Yifan Peng , Akhil Raj , Ramin Zabih , Curtis L. Cole

The Vision-Language Pre-training (VLP) models like CLIP have gained popularity in recent years. However, many works found that the social biases hidden in CLIP easily manifest in downstream tasks, especially in image retrieval, which can…

Computer Vision and Pattern Recognition · Computer Science 2024-05-31 Junyang Wang , Yi Zhang , Jitao Sang

In many countries, personal information that can be published or shared between organizations is regulated and, therefore, documents must undergo a process of de-identification to eliminate or obfuscate confidential data. Our work focuses…

Computation and Language · Computer Science 2019-10-10 Diego Garat , Dina Wonsever

We present PIIBench, a unified benchmark corpus for Personally Identifiable Information (PII) detection in natural language text. Existing resources for PII detection are fragmented across domain-specific corpora with mutually incompatible…

Computation and Language · Computer Science 2026-04-20 Pritesh Jha

For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data…

Computation and Language · Computer Science 2025-03-05 Atiquer Rahman Sarkar , Yao-Shun Chuang , Noman Mohammed , Xiaoqian Jiang

Psychiatric narratives encode patient identity not only through explicit identifiers but also through idiosyncratic life events embedded in their clinical structure. Existing de-identification approaches, including PHI masking and LLM-based…

Computation and Language · Computer Science 2026-04-17 Kyung Ho Lim , Byung-Hoon Kim

With the rise of cameras and smart sensors, humanity generates an exponential amount of data. This valuable information, including underrepresented cases like AI in medical settings, can fuel new deep-learning tools. However, data…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Zikui Cai , Zhongpai Gao , Benjamin Planche , Meng Zheng , Terrence Chen , M. Salman Asif , Ziyan Wu

Medical imaging research increasingly depends on large-scale data sharing to promote reproducibility and train Artificial Intelligence (AI) models. Ensuring patient privacy remains a significant challenge for open-access data sharing.…

The digitization of healthcare has facilitated the sharing and re-using of medical data but has also raised concerns about confidentiality and privacy. HIPAA (Health Insurance Portability and Accountability Act) mandates removing…

Background : De-identification of DICOM (Digital Imaging and Communi-cations in Medicine) files is an essential component of medical image research. Personal Identifiable Information (PII) and/or Personal Health Identifying Information…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Bufano Michele , Kotter Elmar

The robust development of Electronic Health Records (EHRs) causes a significant growth in sharing EHRs for clinical research. However, such a sharing makes it difficult to protect patient's privacy. A number of automated de-identification…

Cryptography and Security · Computer Science 2012-11-19 Jie Qian , Nafees Qamar

The integration of artificial intelligence (AI) into pathology is advancing precision medicine by improving diagnosis, treatment planning, and patient outcomes. Digitised whole-slide images (WSIs) capture rich spatial and morphological…