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Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology, and though experiments that…

Neurons and Cognition · Quantitative Biology 2022-10-12 Edward D. Lee , Xiaowen Chen , Bryan C. Daniels

Elongate limbless robots have the potential to locomote through tightly packed spaces for applications such as search-and-rescue and industrial inspections. The capability to effectively and robustly maneuver elongate limbless robots is…

Brain research has been driven by enquiry for principles of brain structure organization and its control mechanisms. The neuronal wiring map of C. elegans, the only complete connectome available till date, presents an incredible opportunity…

Neurons and Cognition · Quantitative Biology 2016-11-28 Rahul Badhwar , Ganesh Bagler

Quantitative models of associative learning that explain the behavior of real animals with high precision have turned out very difficult to construct. We do this in the context of the dynamics of the thermal preference of C. elegans. For…

Biological Physics · Physics 2022-06-02 Ahmed Roman , Konstantine Palanski , Ilya Nemenman , William S Ryu

The locomotion of Caenorhabditis elegans exhibits complex patterns. In particular, the worm combines mildly curved runs and sharp turns to steer its course. Both runs and sharp turns of various types are important components of taxis…

Neurons and Cognition · Quantitative Biology 2010-09-14 Jun Ohkubo , Kazushi Yoshida , Yuichi Iino , Naoki Masuda

The nematode Caenorhabditis elegans is a well-known model organism used to investigate fundamental questions in biology. Motility assays of this small roundworm are designed to study the relationships between genes and behavior. Commonly,…

Computer Vision and Pattern Recognition · Computer Science 2015-05-19 Raphael Sznitman , Manaswi Gupta , Gregory D. Hager , Paulo E. Arratia , Josue Sznitman

Navigating our physical environment requires changing directions and turning. Despite its ecological importance, we do not have a unified theoretical account of non-straight-line human movement. Here, we present a unified optimality…

Neurons and Cognition · Quantitative Biology 2021-11-03 Geoffrey L. Brown , Nidhi Seethapathi , Manoj Srinivasan

What fascinates us about animal behavior is its richness and complexity, but understanding behavior and its neural basis requires a simpler description. Traditionally, simplification has been imposed by training animals to engage in a…

Neurons and Cognition · Quantitative Biology 2016-07-13 Greg J. Stephens , Leslie C. Osborne , William Bialek

Neuromechanics aims to understand the link between an animal's neural activity and its physical behaviors. Recent advances in experimental and machine learning techniques enable simultaneous recordings of neural and locomotion dynamics over…

Biological Physics · Physics 2026-05-06 Alexander E. Cohen , Jörn Dunkel

Nematode species are well-known for their invariant cell lineage pattern during development. Combining knowledge about the fate specification induced by asymmetric division and the anti-correlation between cell cycle length and cell volume…

Cell Behavior · Quantitative Biology 2021-03-24 Guoye Guan , Ming-Kin Wong , Zhongying Zhao , Lei-Han Tang , Chao Tang

Reduced motor control is one of the most frequent features associated with aging and disease. Nonlinear and fractal analyses have proved to be useful in investigating human physiological alterations with age and disease. Similar findings…

Quantitative Methods · Quantitative Biology 2017-09-06 Luiz G. A. Alves , Peter B. Winter , Leonardo N. Ferreira , Renée M. Brielmann , Richard I. Morimoto , Luís A. N. Amaral

Undulatory swimming is a widespread propulsion strategy adopted by many small-scale organisms including various single-cell eukaryotes and nematodes. In this work, we report a comprehensive study of undulatory locomotion of a finite…

Fluid Dynamics · Physics 2015-06-16 R. Berman , O. Kenneth , J. Sznitman , A. Leshansky

Caenorhabditis elegans, a free-living soil nematode, propels itself by producing undulatory body motion and displays a rich variety of body shapes and trajectories during its locomotion in complex environments. Here we show that the complex…

Thanks to recent technological advances, it is now possible to track with an unprecedented precision and for long periods of time the movement patterns of many living organisms in their habitat. The increasing amount of data available on…

Populations and Evolution · Quantitative Biology 2015-05-19 Denis Boyer , Peter D. Walsh

The roundworm C. elegans exhibits robust escape behavior in response to rapidly rising temperature. The behavior lasts for a few seconds, shows history dependence, involves both sensory and motor systems, and is too complicated to model…

Neurons and Cognition · Quantitative Biology 2019-06-19 Bryan C. Daniels , William S. Ryu , Ilya Nemenman

How do the same mechanisms that faithfully regenerate complex developmental programs in spite of environmental and genetic perturbations also permit responsiveness to environmental signals, adaptation, and genetic evolution? Using the…

Quantitative Methods · Quantitative Biology 2023-10-20 David J. Jordan , Eric A. Miska

Efficient navigation in swarms often relies on the emergence of decentralized approaches that minimize traversal time or energy. Stigmergy, where agents modify a shared environment that then modifies their behavior, is a classic mechanism…

Neurons and Cognition · Quantitative Biology 2026-01-08 Vishaal Krishnan , L. Mahadevan

We analyse the neural dynamics and its relation with the emergent behaviour of a robotic vehicle that is controlled by a neural network numerical simulation based on the nervous system of the nematode Caenorhabditis elegans. The robot…

Neurons and Cognition · Quantitative Biology 2020-11-19 Carlos E. Valencia Urbina , Sergio A. Cannas , Pablo M. Gleiser

Reorientation (turning in plane) plays a critical role for all robots in any field application, especially those that in confined spaces. While important, reorientation remains a relatively unstudied problem for robots, including limbless…

Robotics · Computer Science 2022-03-04 Tianyu Wang , Baxi Chong , Yuelin Deng , Ruijie Fu , Howie Choset , Daniel I. Goldman

Animals must integrate sensory cues with their current behavioral context to generate a suitable response. How this integration occurs is poorly understood. Previously we developed high throughput methods to probe neural activity in…

Neurons and Cognition · Quantitative Biology 2023-09-25 Sandeep Kumar , Anuj K Sharma , Andrew Tran , Andrew M Leifer