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The value of biomedical research--a $1.7 trillion annual investment--is ultimately determined by its downstream, real-world impact. Current objective predictors of impact rest on proxy, reductive metrics of dissemination, such as paper…

Keeping track of translational research is essential to evaluating the performance of programs on translational medicine. Despite several indicators in previous studies, a consensus measure is still needed to represent the translational…

Digital Libraries · Computer Science 2022-11-24 Xin Li , Xuli Tang , Wei Lu

Biomedical research encompasses diverse types of activities, from basic science ("bench") to clinical medicine ("bedside") to bench-to-bedside translational research. It, however, remains unclear whether different types of research receive…

Digital Libraries · Computer Science 2019-12-17 Qing Ke

What kind of basic research ideas are more likely to get applied in practice? There is a long line of research investigating patterns of knowledge transfer, but it generally focuses on documents as the unit of analysis and follow their…

Computers and Society · Computer Science 2020-10-15 Hancheng Cao , Mengjie Cheng , Zhepeng Cen , Daniel A. McFarland , Xiang Ren

Objective: Translational science aims at "translating" basic scientific discoveries into clinical applications. The identification of translational science has practicality such as evaluating the effectiveness of investments made into large…

Digital Libraries · Computer Science 2020-07-13 Qing Ke

Multimodal machine translation involves drawing information from more than one modality, based on the assumption that the additional modalities will contain useful alternative views of the input data. The most prominent tasks in this area…

Computation and Language · Computer Science 2019-12-02 Umut Sulubacak , Ozan Caglayan , Stig-Arne Grönroos , Aku Rouhe , Desmond Elliott , Lucia Specia , Jörg Tiedemann

In recent years, multi-modal machine translation has attracted significant interest in both academia and industry due to its superior performance. It takes both textual and visual modalities as inputs, leveraging visual context to tackle…

Computation and Language · Computer Science 2024-05-24 Huangjun Shen , Liangying Shao , Wenbo Li , Zhibin Lan , Zhanyu Liu , Jinsong Su

Is calendar time the true clock of innovation? By combining complexity science with innovation economics and using vaccine datasets containing over three million citations and eight regulatory authorisations, we discover that calendar time…

Physics and Society · Physics 2024-09-27 Martin Ho , Henry CW Price , Tim S Evans , Eoin O'Sullivan

Demonstrating the practical value of public research has been an important subject in science policy. Here we present a detailed study on the evolution of the citation linkage between life science related patents and biomedical research…

Digital Libraries · Computer Science 2020-07-13 Qing Ke

An innovative approach to analyze the complexity of translating novel molecular entities and nanomaterials into pharmaceutical alternatives (i.e., knowledge translation, KT) is discussed. First, some key concepts on the organization and…

Social and Information Networks · Computer Science 2016-09-20 David Fajardo , Victor Castano

Natural language processing (NLP) research combines the study of universal principles, through basic science, with applied science targeting specific use cases and settings. However, the process of exchange between basic NLP and…

Computation and Language · Computer Science 2021-04-19 Denis Newman-Griffis , Jill Fain Lehman , Carolyn Rosé , Harry Hochheiser

Translation is one of the main steps in the synthesis of proteins. It consists of ribosomes that translate sequences of nucleotides encoded on mRNA into polypeptide sequences of amino acids. Ribosomes bound to mRNA move unidirectionally,…

Subcellular Processes · Quantitative Biology 2022-01-19 Olivier Dauloudet , Izaak Neri , Jean-Charles Walter , Jérôme Dorignac , Frédéric Geniet , Andrea Parmeggiani

Word embeddings have found their way into a wide range of natural language processing tasks including those in the biomedical domain. While these vector representations successfully capture semantic and syntactic word relations, hidden…

Translation is a key step in the synthesis of proteins. Accordingly, cells have evolved an intricate array of control mechanisms to regulate this process. By constructing a multi-component mathematical framework for translation we uncover…

Biological Physics · Physics 2019-12-04 Liang Wang , M. Carmen Romano , Fordyce A. Davidson

Machine translation (MT) plays an important role in benefiting linguists, sociologists, computer scientists, etc. by processing natural language to translate it into some other natural language. And this demand has grown exponentially over…

Computation and Language · Computer Science 2019-01-07 Ankush Garg , Mayank Agarwal

Numerous challenges persist that delay clinical interpretation of human genetic variants, to name a few: (1) un- structured PubMed articles are the most abundant source of evidence, yet their variant annotations are difficult to query…

Information Retrieval · Computer Science 2016-02-10 Andrew J. McMurry

The growing popularity of neural machine translation (NMT) and LLMs represented by ChatGPT underscores the need for a deeper understanding of their distinct characteristics and relationships. Such understanding is crucial for language…

Computation and Language · Computer Science 2024-10-15 Zhaokun Jiang , Qianxi Lv , Ziyin Zhang , Lei Lei

Despite the intense attention and considerable investment into clinical machine learning research, relatively few applications have been deployed at a large-scale in a real-world clinical environment. While research is important in…

Along with the great success of deep neural networks, there is also growing concern about their black-box nature. The interpretability issue affects people's trust on deep learning systems. It is also related to many ethical problems, e.g.,…

Machine Learning · Computer Science 2022-02-01 Yu Zhang , Peter Tiňo , Aleš Leonardis , Ke Tang

Researchers may describe different aspects of past scientific publications in their publications and the descriptions may keep changing in the evolution of science. The diverse and changing descriptions (i.e., citation context) on a…

Digital Libraries · Computer Science 2017-11-17 Jiangen He , Chaomei Chen
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