English
Related papers

Related papers: MolCA: Molecular Graph-Language Modeling with Cros…

200 papers

Knowledge Graph Completion (KGC) aims to conduct reasoning on the facts within knowledge graphs and automatically infer missing links. Existing methods can mainly be categorized into structure-based or description-based. On the one hand,…

Computation and Language · Computer Science 2023-08-17 Jiabang He , Liu Jia , Lei Wang , Xiyao Li , Xing Xu

Deep learning in computational biochemistry has traditionally focused on molecular graphs neural representations; however, recent advances in language models highlight how much scientific knowledge is encoded in text. To bridge these two…

Machine Learning · Computer Science 2023-07-26 Romain Lacombe , Andrew Gaut , Jeff He , David Lüdeke , Kateryna Pistunova

Pre-trained on extensive text and image corpora, current Multi-Modal Large Language Models (MLLM) have shown strong capabilities in general visual reasoning tasks. However, their performance is still lacking in physical domains that require…

Artificial Intelligence · Computer Science 2025-07-04 Erle Zhu , Yadi Liu , Zhe Zhang , Xujun Li , Jin Zhou , Xinjie Yu , Minlie Huang , Hongning Wang

Vision-and-language reasoning requires an understanding of visual concepts, language semantics, and, most importantly, the alignment and relationships between these two modalities. We thus propose the LXMERT (Learning Cross-Modality Encoder…

Computation and Language · Computer Science 2019-12-05 Hao Tan , Mohit Bansal

Masked graph modeling excels in the self-supervised representation learning of molecular graphs. Scrutinizing previous studies, we can reveal a common scheme consisting of three key components: (1) graph tokenizer, which breaks a molecular…

Machine Learning · Computer Science 2024-01-17 Zhiyuan Liu , Yaorui Shi , An Zhang , Enzhi Zhang , Kenji Kawaguchi , Xiang Wang , Tat-Seng Chua

For multimodal LLMs, the synergy of visual comprehension (textual output) and generation (visual output) presents an ongoing challenge. This is due to a conflicting objective: for comprehension, an MLLM needs to abstract the visuals; for…

Computer Vision and Pattern Recognition · Computer Science 2024-05-06 Kaihang Pan , Siliang Tang , Juncheng Li , Zhaoyu Fan , Wei Chow , Shuicheng Yan , Tat-Seng Chua , Yueting Zhuang , Hanwang Zhang

Molecule-and-text cross-modal representation learning has emerged as a promising direction for enhancing the quality of molecular representation, thereby improving performance in various scientific fields. However, most approaches employ a…

Quantitative Methods · Quantitative Biology 2025-03-04 Yikun Zhang , Geyan Ye , Chaohao Yuan , Bo Han , Long-Kai Huang , Jianhua Yao , Wei Liu , Yu Rong

Molecule discovery plays a crucial role in various scientific fields, advancing the design of tailored materials and drugs. However, most of the existing methods heavily rely on domain experts, require excessive computational cost, or…

Computation and Language · Computer Science 2024-05-10 Jiatong Li , Yunqing Liu , Wenqi Fan , Xiao-Yong Wei , Hui Liu , Jiliang Tang , Qing Li

Molecular representation learning plays a crucial role in advancing applications such as drug discovery and material design. Existing work leverages 2D and 3D modalities of molecular information for pre-training, aiming to capture…

Machine Learning · Computer Science 2025-10-09 Tengwei Song , Min Wu , Yuan Fang

Machine learning techniques have recently been adopted in various applications in medicine, biology, chemistry, and material engineering. An important task is to predict the properties of molecules, which serves as the main subroutine in…

Machine Learning · Computer Science 2019-11-12 Shengchao Liu , Mehmet Furkan Demirel , Yingyu Liang

Generating font glyphs of consistent style from one or a few reference glyphs, i.e., font completion, is an important task in topographical design. As the problem is more well-defined than general image style transfer tasks, thus it has…

Computer Vision and Pattern Recognition · Computer Science 2021-08-31 Ye Yuan , Wuyang Chen , Zhaowen Wang , Matthew Fisher , Zhifei Zhang , Zhangyang Wang , Hailin Jin

The Large Vision-Language Model (LVLM) has enhanced the performance of various downstream tasks in visual-language understanding. Most existing approaches encode images and videos into separate feature spaces, which are then fed as inputs…

Computer Vision and Pattern Recognition · Computer Science 2024-10-02 Bin Lin , Yang Ye , Bin Zhu , Jiaxi Cui , Munan Ning , Peng Jin , Li Yuan

Large language models appear to learn facts from the large text corpora they are trained on. Such facts are encoded implicitly within their many parameters, making it difficult to verify or manipulate what knowledge has been learned.…

Computation and Language · Computer Science 2022-10-27 Yifan Hou , Wenxiang Jiao , Meizhen Liu , Carl Allen , Zhaopeng Tu , Mrinmaya Sachan

Molecular representation learning is vital for various downstream applications, including the analysis and prediction of molecular properties and side effects. While Graph Neural Networks (GNNs) have been a popular framework for modeling…

Machine Learning · Computer Science 2025-02-18 Pengcheng Jiang , Cao Xiao , Tianfan Fu , Parminder Bhatia , Taha Kass-Hout , Jimeng Sun , Jiawei Han

Molecular representation learning, a cornerstone for downstream tasks like molecular captioning and molecular property prediction, heavily relies on Graph Neural Networks (GNN). However, GNN suffers from the over-smoothing problem, where…

Machine Learning · Computer Science 2025-08-13 Zihang Shao , Wentao Lei , Lei Wang , Wencai Ye , Li Liu

Molecular graph neural networks (GNNs) often focus exclusively on XYZ-based geometric representations and thus overlook valuable chemical context available in public databases like PubChem. This work introduces a multimodal framework that…

Machine Learning · Computer Science 2025-05-20 Can Polat , Hasan Kurban , Erchin Serpedin , Mustafa Kurban

Large Vision-Language Models (LVLMs) have exhibited impressive capabilities across various visual tasks, yet they remain hindered by the persistent challenge of hallucinations. To address this critical issue, we propose Mixture of Decoding…

Computation and Language · Computer Science 2025-06-11 Xinlong Chen , Yuanxing Zhang , Qiang Liu , Junfei Wu , Fuzheng Zhang , Tieniu Tan

Molecular representation learning is pivotal in predicting molecular properties and advancing drug design. Traditional methodologies, which predominantly rely on homogeneous graph encoding, are limited by their inability to integrate…

Machine Learning · Computer Science 2025-03-24 Mukun Chen , Jia Wu , Shirui Pan , Fu Lin , Bo Du , Xiuwen Gong , Wenbin Hu

We introduce CLARGA, a general-purpose multimodal fusion architecture for multimodal representation learning that works with any number and type of modalities without changing the underlying framework. Given a supervised dataset, CLARGA can…

Computer Vision and Pattern Recognition · Computer Science 2025-12-16 Santosh Patapati

Visual Question Answering (VQA) is a challenging problem that requires to process multimodal input. Answer-Set Programming (ASP) has shown great potential in this regard to add interpretability and explainability to modular VQA…

Artificial Intelligence · Computer Science 2025-02-14 Jakob Johannes Bauer , Thomas Eiter , Nelson Higuera Ruiz , Johannes Oetsch