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The prediction of physicochemical properties from molecular structures is a crucial task for artificial intelligence aided molecular design. A growing number of Graph Neural Networks (GNNs) have been proposed to address this challenge.…

Machine Learning · Computer Science 2020-11-17 Shuo Zhang , Yang Liu , Lei Xie

Multimodal large language models (MLLMs) have gained significant attention due to their strong multimodal understanding capability. However, existing works rely heavily on modality-specific encoders, which usually differ in architecture and…

Computer Vision and Pattern Recognition · Computer Science 2025-01-10 Jiaming Han , Kaixiong Gong , Yiyuan Zhang , Jiaqi Wang , Kaipeng Zhang , Dahua Lin , Yu Qiao , Peng Gao , Xiangyu Yue

Recent advancements in Multimodal Large Language Models (MLLMs) have revolutionized the field of vision-language understanding by integrating visual perception capabilities into Large Language Models (LLMs). The prevailing trend in this…

Computer Vision and Pattern Recognition · Computer Science 2024-07-22 Sirnam Swetha , Jinyu Yang , Tal Neiman , Mamshad Nayeem Rizve , Son Tran , Benjamin Yao , Trishul Chilimbi , Mubarak Shah

A major challenge in the pharmaceutical industry is to design novel molecules with specific desired properties, especially when the property evaluation is costly. Here, we propose MNCE-RL, a graph convolutional policy network for molecular…

Machine Learning · Computer Science 2020-11-17 Chencheng Xu , Qiao Liu , Minlie Huang , Tao Jiang

We consider feature representation learning problem of molecular graphs. Graph Neural Networks have been widely used in feature representation learning of molecular graphs. However, most existing methods deal with molecular graphs…

Machine Learning · Computer Science 2022-06-08 Zhaoning Yu , Hongyang Gao

Multi-modal graphs, which integrate diverse multi-modal features and relations, are ubiquitous in real-world applications. However, existing multi-modal graph learning methods are typically trained from scratch for specific graph data and…

Machine Learning · Computer Science 2025-11-26 Xin Wang , Zeyang Zhang , Linxin Xiao , Haibo Chen , Chendi Ge , Wenwu Zhu

In recent years, multimodal large language models (MLLMs) have shown remarkable capabilities in tasks like visual question answering and common sense reasoning, while visual perception models have made significant strides in perception…

Computer Vision and Pattern Recognition · Computer Science 2024-06-25 Guanqun Wang , Xinyu Wei , Jiaming Liu , Ray Zhang , Yichi Zhang , Kevin Zhang , Maurice Chong , Shanghang Zhang

We present $\textbf{MolT5}$ $-$ a self-supervised learning framework for pretraining models on a vast amount of unlabeled natural language text and molecule strings. $\textbf{MolT5}$ allows for new, useful, and challenging analogs of…

Computation and Language · Computer Science 2022-11-07 Carl Edwards , Tuan Lai , Kevin Ros , Garrett Honke , Kyunghyun Cho , Heng Ji

Graph plays an important role in representing complex relationships in real-world applications such as social networks, biological data and citation networks. In recent years, Large Language Models (LLMs) have achieved tremendous success in…

Machine Learning · Computer Science 2024-03-19 Zheyuan Liu , Xiaoxin He , Yijun Tian , Nitesh V. Chawla

Recent advancements in Graph Contrastive Learning (GCL) have demonstrated remarkable effectiveness in improving graph representations. However, relying on predefined augmentations (e.g., node dropping, edge perturbation, attribute masking)…

Machine Learning · Computer Science 2025-02-27 Khaled Mohammed Saifuddin , Shihao Ji , Esra Akbas

While multi-modal models have successfully integrated information from image, video, and audio modalities, integrating graph modality into large language models (LLMs) remains unexplored. This discrepancy largely stems from the inherent…

Computation and Language · Computer Science 2023-10-13 Yuanchun Shen , Ruotong Liao , Zhen Han , Yunpu Ma , Volker Tresp

Some self-supervised cross-modal learning approaches have recently demonstrated the potential of image signals for enhancing point cloud representation. However, it remains a question on how to directly model cross-modal local and global…

Computer Vision and Pattern Recognition · Computer Science 2022-11-24 Honggu Zhou , Xiaogang Peng , Jiawei Mao , Zizhao Wu , Ming Zeng

Molecular representation learning is a crucial task in predicting molecular properties. Molecules are often modeled as graphs where atoms and chemical bonds are represented as nodes and edges, respectively, and Graph Neural Networks (GNNs)…

Machine Learning · Computer Science 2023-05-23 Jiahao Chen , Yurou Liu , Jiangmeng Li , Bing Su , Jirong Wen

The field of object detection and understanding is rapidly evolving, driven by advances in both traditional CNN-based models and emerging multi-modal large language models (LLMs). While CNNs like ResNet and YOLO remain highly effective for…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Nirmal Elamon , Rouzbeh Davoudi

Currently, the main approach for Large Language Models (LLMs) to tackle the hallucination issue is incorporating Knowledge Graphs(KGs).However, LLMs typically treat KGs as plain text, extracting only semantic information and limiting their…

Computation and Language · Computer Science 2025-09-29 Yifang Zhang , Pengfei Duan , Yiwen Yang , Shengwu Xiong

Recent advancements in multimodal foundation models have yielded significant progress in vision-language understanding. Initial attempts have also explored the potential of multimodal large language models (MLLMs) for visual content…

Computer Vision and Pattern Recognition · Computer Science 2024-10-22 Rongyao Fang , Chengqi Duan , Kun Wang , Hao Li , Hao Tian , Xingyu Zeng , Rui Zhao , Jifeng Dai , Hongsheng Li , Xihui Liu

Recent advancements in Multimodal Large Language Models (MLLMs) underscore the significance of scalable models and data to boost performance, yet this often incurs substantial computational costs. Although the Mixture of Experts (MoE)…

Artificial Intelligence · Computer Science 2024-05-21 Yunxin Li , Shenyuan Jiang , Baotian Hu , Longyue Wang , Wanqi Zhong , Wenhan Luo , Lin Ma , Min Zhang

In precision medicine, quantitative multi-omic features, topological context, and textual biological knowledge play vital roles in identifying disease-critical signaling pathways and targets. Existing pipelines capture only part of…

Artificial Intelligence · Computer Science 2025-12-17 Heming Zhang , Di Huang , Wenyu Li , Michael Province , Yixin Chen , Philip Payne , Fuhai Li

Mechanistic interpretability seeks to understand how Large Language Models (LLMs) represent and process information. Recent approaches based on dictionary learning and transcoders enable representing model computation in terms of sparse,…

The graph neural network (GNN) has been a powerful deep-learning tool in chemistry domain, due to its close connection with molecular graphs. Most GNN models collect and update atom and molecule features from the fed atom (and, in some…

Chemical Physics · Physics 2022-03-18 Yeji Kim , Yoonho Jeong , Jihoo Kim , Eok Kyun Lee , Won June Kim , Insung S. Choi
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