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There has been much progress in data-driven artificial intelligence technology for medical image analysis in the last decades. However, it still remains challenging due to its distinctive complexity of acquiring and annotating image data,…

Computer Vision and Pattern Recognition · Computer Science 2021-06-30 Chao Gou , Tianyu Shen , Wenbo Zheng , Huadan Xue , Hui Yu , Qiang Ji , Zhengyu Jin , Fei-Yue Wang

The rapid development of quantum computing (QC) in the NISQ era urgently demands a low-level benchmark suite and insightful evaluation metrics for characterizing the properties of prototype NISQ devices, the efficiency of QC programming…

Quantum Physics · Physics 2022-05-10 Ang Li , Samuel Stein , Sriram Krishnamoorthy , James Ang

Motivation: High-throughput sequencing enables expression analysis at the level of individual transcripts. The analysis of transcriptome expression levels and differential expression estimation requires a probabilistic approach to properly…

Genomics · Quantitative Biology 2012-10-10 Peter Glaus , Antti Honkela , Magnus Rattray

In radiological practice, multi-sequence MRI is routinely acquired to characterize anatomy and tissue. However, due to the heterogeneity of imaging protocols and contra-indications to contrast agents, some MRI sequences, e.g.…

Image and Video Processing · Electrical Eng. & Systems 2023-09-12 Yunjie Chen , Marius Staring , Jelmer M. Wolterink , Qian Tao

Spin-echo functional MRI (SE-fMRI) has the potential to improve spatial specificity when compared to gradient-echo fMRI. However, high spatiotemporal resolution SE-fMRI with large slice-coverage is challenging as SE-fMRI requires a long…

Signals comprised of a stream of short pulses appear in many applications including bio-imaging and radar. The recent finite rate of innovation framework, has paved the way to low rate sampling of such pulses by noticing that only a small…

Information Theory · Computer Science 2015-05-18 Ronen Tur , Yonina C. Eldar , Zvi Friedman

BACKGROUND: Functional Magnetic Resonance Imaging (fMRI) is based on the Blood Oxygenation Level Dependent contrast and has been exploited for the indirect study of the neuronal activity within both the brain and the spinal cord. However,…

Purpose: Conventional MRI is relying on the assumption of the magnetic field being homogeneous in direction and amplitude. However, with the growing interest in portable, affordable point-of-care MRI systems, these assumptions do not…

Medical Physics · Physics 2026-02-17 Fabian Bschorr , Thomas Hüfken , Tobias Lobmeyer , Volker Rasche

Diffusion MRI is a modern neuroimaging modality with a unique ability to acquire microstructural information by measuring water self-diffusion at the voxel level. However, it generates huge amounts of data, resulting from a large number of…

Image and Video Processing · Electrical Eng. & Systems 2023-04-06 Ikram Jumakulyyev , Thomas Schultz

MRI-based medical imaging has become indispensable in modern clinical diagnosis, particularly for brain tumor detection. However, the rapid growth in data volume poses challenges for conventional diagnostic approaches. Although deep…

Computer Vision and Pattern Recognition · Computer Science 2026-03-31 Hayder Saad Abdulbaqi , Mohammed Hadi Rahim , Mohammed Hassan Hadi , Haider Ali Aboud , Ali Hussein Allawi

Ultrafast power Doppler imaging (uPDI) has become a powerful tool for both research and clinical applications. However, existing simulation tools are insufficient for generating quantitatively accurate three-dimensional (3D) flow fields…

Signal Processing · Electrical Eng. & Systems 2025-10-28 Qiang Fu , Changhui Li

Rapid, reliable, and accurate interpretation of medical time-series signals is crucial for high-stakes clinical decision-making. Deep learning methods offered unprecedented performance in medical signal processing but at a cost: they were…

Signal Processing · Electrical Eng. & Systems 2024-10-08 Sully F. Chen , Zhicheng Guo , Cheng Ding , Xiao Hu , Cynthia Rudin

Inspired by the recently proposed Magnetic Resonance Fingerprinting technique, we develop a principled compressed sensing framework for quantitative MRI. The three key components are: a random pulse excitation sequence following the MRF…

Information Theory · Computer Science 2013-12-10 Mike Davies , Gilles Puy , Pierre Vandergheynst , Yves Wiaux

Scalable and efficient numerical simulations continue to gain importance, as computation is firmly established as the third pillar of discovery, alongside theory and experiment. Meanwhile, the performance of computing hardware grows through…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-26 Pietro Incardona , Antonio Leo , Yaroslav Zaluzhnyi , Rajesh Ramaswamy , Ivo F. Sbalzarini

Objective: Acquiring fully sampled training data is challenging for many MRI applications. We present a self-supervised image reconstruction method, termed ReSiDe, capable of recovering images solely from undersampled data. Materials and…

Image and Video Processing · Electrical Eng. & Systems 2024-11-26 Muhammad Shafique , Sizhuo Liu , Philip Schniter , Rizwan Ahmad

We propose to use Gaussian process regression to accurately estimate the diffusion MRI signal at arbitrary locations in q-space. By estimating the signal on a grid, we can do synthetic diffusion spectrum imaging: reconstructing the ensemble…

Applications · Statistics 2020-01-03 Jens Sjölund , Anders Eklund , Evren Özarslan , Hans Knutsson

Single-photon emission computed tomography for myocardial perfusion imaging (MPI SPECT) is a widely used diagnostic tool for coronary artery disease. However, the procedure requires considerable scanning time, leading to patient discomfort…

Image and Video Processing · Electrical Eng. & Systems 2026-04-27 Zezhang Yang , Zitong Yu , Nuri Choi , Janice Tania , Wenxuan Xue , Barry A. Siegel , Abhinav K. Jha

This paper presents a method of sequence-to-sequence (seq2seq) voice conversion using non-parallel training data. In this method, disentangled linguistic and speaker representations are extracted from acoustic features, and voice conversion…

Audio and Speech Processing · Electrical Eng. & Systems 2020-01-14 Jing-Xuan Zhang , Zhen-Hua Ling , Li-Rong Dai

Standardized performance evaluation of fluorescence imaging systems remains a critical unmet need in the field of fluorescence-guided surgery (FGS). While the American Association of Physicists in Medicine (AAPM) TG311 report and recent FDA…

Medical Physics · Physics 2025-04-23 Eammon A. Littler , Emmanuel A. Mannoh , Ethan P. M. LaRochelle

Purpose: Recent studies have shown that spin-lock MRI can simplify quantitative magnetization transfer (MT) by eliminating its dependency on water pool parameters, removing the need for a T1 map in macromolecular proton fraction (MPF)…

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