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Tomographic imaging has benefited from advances in X-ray sources, detectors and optics to enable novel observations in science, engineering and medicine. These advances have come with a dramatic increase of input data in the form of faster…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-12-25 Stefano Marchesini , Anuradha Trivedi , Pablo Enfedaque , Talita Perciano , Dilworth Parkinson

In optical detection of ultrasound, resonators with high Q-factors are often used to maximize sensitivity. However, in order to perform parallel interrogation, conventional interferometric techniques require an overlap between the resonator…

Optics · Physics 2019-01-27 Yoav Hazan , Amir Rosenthal

Purpose: To describe the current properties and capabilities of an open-source hardware and software package that is being developed by many sites internationally with the aim of providing an inexpensive yet flexible platform for low-cost…

Purpose- High speed image processing is a challenging task for real-time applications such as product quality control of manufacturing lines. Smart image sensors use an array of in-pixel processors to facilitate high-speed real-time image…

Signal Processing · Electrical Eng. & Systems 2021-10-06 Ahmad Reza Danesh , Mehdi Habibi

Fluorescence lifetime imaging (FLI) is a widely used technique in the biomedical field for measuring the decay times of fluorescent molecules, providing insights into metabolic states, protein interactions, and ligand-receptor bindings.…

A flow-through sensing platform based on open-ended porous silicon (PSi) microcavity membranes that are compatible with integration in on-chip sensor arrays is demonstrated. Due to the high aspect ratio of PSi nanopores, the performance of…

Materials Science · Physics 2016-10-27 Yiliang Zhao , Girija Gaur , Scott T. Retterer , Paul E. Laibinis , Sharon M. Weiss

High-resolution magnetic resonance imaging (MRI) is essential in clinical diagnosis. However, its long acquisition time remains a critical issue. Parallel imaging (PI) is a common approach to reduce acquisition time by periodically skipping…

Image and Video Processing · Electrical Eng. & Systems 2025-06-10 Hao Li , Yusheng Zhou , Jianan Liu , Xiling Liu , Tao Huang , Zhihan Lyu , Weidong Cai , Wei Chen

Compressive Sensing (CS) is a new technique for the efficient acquisition of signals, images, and other data that have a sparse representation in some basis, frame, or dictionary. By sparse we mean that the N-dimensional basis…

Information Theory · Computer Science 2015-05-18 Chinmay Hegde , Richard G. Baraniuk

Purpose: Repeated brain MRI scans are performed in many clinical scenarios, such as follow up of patients with tumors and therapy response assessment. In this paper, the authors show an approach to utilize former scans of the patient for…

Medical Physics · Physics 2017-08-28 Lior Weizman , Yonina C. Eldar , Dafna Ben Bashat

Quantitative Magnetic Resonance Imaging (qMRI) enables the reproducible measurement of biophysical parameters in tissue. The challenge lies in solving a nonlinear, ill-posed inverse problem to obtain the desired tissue parameter maps from…

Image and Video Processing · Electrical Eng. & Systems 2024-05-08 Felix F Zimmermann , Christoph Kolbitsch , Patrick Schuenke , Andreas Kofler

Multi-sequence MRI is valuable in clinical settings for reliable diagnosis and treatment prognosis, but some sequences may be unusable or missing for various reasons. To address this issue, MRI synthesis is a potential solution. Recent deep…

Image and Video Processing · Electrical Eng. & Systems 2023-07-04 Luyi Han , Tianyu Zhang , Yunzhi Huang , Haoran Dou , Xin Wang , Yuan Gao , Chunyao Lu , Tan Tao , Ritse Mann

Many medical imaging techniques utilize fitting approaches for quantitative parameter estimation and analysis. Common examples are pharmacokinetic modeling in DCE MRI/CT, ADC calculations and IVIM modeling in diffusion-weighted MRI and…

Purpose: In the present work we describe the correction of diffusion-weighted MRI for site and scanner biases using a novel method based on invariant representation. Theory and Methods: Pooled imaging data from multiple sources are subject…

Quantitative Methods · Quantitative Biology 2020-02-04 Daniel Moyer , Greg Ver Steeg , Chantal M. W. Tax , Paul M. Thompson

This paper proposes two new open-source iris recognition algorithms, providing both Python and IREX-compliant C++ implementations to be submitted to the official IREX X program. This work has two primary goals: (a) to conduct the first-ever…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 Siamul Karim Khan , Patrick J. Flynn , Adam Czajka

Since the initial patent in 2001, the Magnetic Particle Imaging (MPI) community has been striving to develop an MPI scanner suitable for human applications. Numerous contributions from different research fields, regarding tracer…

Multi-sequence MRIs can be necessary for reliable diagnosis in clinical practice due to the complimentary information within sequences. However, redundant information exists across sequences, which interferes with mining efficient…

Computer Vision and Pattern Recognition · Computer Science 2023-02-02 Luyi Han , Tao Tan , Tianyu Zhang , Yunzhi Huang , Xin Wang , Yuan Gao , Jonas Teuwen , Ritse Mann

Diffusion MRI requires sufficient coverage of the diffusion wavevector space, also known as the q-space, to adequately capture the pattern of water diffusion in various directions and scales. As a result, the acquisition time can be…

Medical Physics · Physics 2018-07-25 Geng Chen , Bin Dong , Yong Zhang , Weili Lin , Dinggang Shen , Pew-Thian Yap

Despite the superior diagnostic capability of Magnetic Resonance Imaging (MRI), its use as a Point-of-Care (PoC) device remains limited by high cost and complexity. To enable such a future by reducing the magnetic field strength, one key…

Image and Video Processing · Electrical Eng. & Systems 2026-02-16 Yuning Du , Jingshuai Liu , Rohan Dharmakumar , Sotirios A. Tsaftaris

Motivation: Open-source bacterial genome assembly remains inaccessible to many biologists due to its complexity. Few software solutions exist that are capable of automating all steps in the process of de novo genome assembly from Illumina…

Quantitative Methods · Quantitative Biology 2014-06-05 David Coil , Guillaume Jospin , Aaron E. Darling

Inspired by the recently proposed Magnetic Resonance Fingerprinting (MRF) technique, we develop a principled compressed sensing framework for quantitative MRI. The three key components are: a random pulse excitation sequence following the…

Information Theory · Computer Science 2014-06-09 Mike Davies , Gilles Puy , Pierre Vandergheynst , Yves Wiaux