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Shortcuts in a regular architecture affect the information transport through the system due to the severe decrease in average path length. A fundamental new perspective in terms of pattern formation is the destabilizing effect of…

Statistical Mechanics · Physics 2009-11-11 Carsten Marr , Marc-Thorsten Huett

A new type of noise-induced synchronous behavior is described. This phenomenon, called incomplete noise-induced synchronization, arises for one-dimensional Ginzburg-Landau equations driven by common noise. The mechanisms resulting in the…

Chaotic Dynamics · Physics 2013-02-19 Alexander E. Hramov , Alexey A. Koronovskii , Pavel V. Popov

The network reciprocity is an important dynamic rule fostering the emergence of cooperation among selfish individuals. This was reported firstly in the seminal work of Nowak and May, where individuals were arranged on the regular lattice…

Adaptation and Self-Organizing Systems · Physics 2015-06-15 Gui-Qing Zhang , Qi-Bo Sun , Lin Wang

The global dynamics of gene regulatory networks are known to show robustness to perturbations in the form of intrinsic and extrinsic noise, as well as mutations of individual genes. One molecular mechanism underlying this robustness has…

Molecular Networks · Quantitative Biology 2015-06-15 Claus Kadelka , David Murrugarra , Reinhard Laubenbacher

We characterize the connectivity structure of feed-forward, deep neural networks (DNNs) using network motif theory. To address whether a particular motif distribution is characteristic of the training task, or function of the DNN, we…

Machine Learning · Computer Science 2024-03-05 Olivia T. Zahn , Thomas L. Daniel , J. Nathan Kutz

The theory of mixed-feedback systems provides an effective framework for the design of robust and tunable oscillations in nonlinear systems characterized by interleaved fast positive and slow negative feedback loops. The goal of this paper…

Dynamical Systems · Mathematics 2024-12-11 Omar Juarez-Alvarez , Alessio Franci

In high-dimensional data, structured noise caused by observed and unobserved factors affecting multiple target variables simultaneously, imposes a serious challenge for modeling, by masking the often weak signal. Therefore, (1) explaining…

We investigate a problem of the necessary and sufficient conditions for appearance of the 1/f fluctuations in the simple systems affected by the external random perturbations, i.e. the power spectral density of the flux of particles moving…

adap-org · Physics 2007-05-23 B. Kaulakys , T. Meskauskas

The counter-intuitive phenomenon of coherence resonance describes a non-monotonic behavior of the regularity of noise-induced oscillations in the excitable regime, leading to an optimal response in terms of regularity of the excited…

Adaptation and Self-Organizing Systems · Physics 2021-03-24 Emre Baspinar , Leonhard Schülen , Simona Olmi , Anna Zakharova

Neural activity in the brain exhibits correlated fluctuations that may strongly influence the properties of neural population coding. However, how such correlated neural fluctuations may arise from the intrinsic neural circuit dynamics and…

Biological Physics · Physics 2023-10-18 Hengyuan Ma , Yang Qi , Pulin Gong , Jie Zhang , Wenlian Lu , Jianfeng Feng

We study synchronization and noise-induced resonance phenomena in systems of globally coupled oscillators, each possessing finite inertia. The behavior of the order parameter, which measures collective synchronization of the system, is…

Statistical Mechanics · Physics 2009-10-31 H. Hong , M. Y. Choi

We study synchronization processes in networks of slightly non identical chaotic systems, for which a complete invariant synchronization manifold does not rigorously exist. We show and quantify how a slightly dispersed distribution in…

We investigate numerically the dynamics of large networks of $N$ globally pulse-coupled integrate and fire neurons in a noise-induced synchronized state. The powerspectrum of an individual element within the network is shown to exhibit in…

chao-dyn · Physics 2009-10-28 Wouter-Jan Rappel , Alain Karma

Feed-forward dynamics, which is well-known to have several important implications in nonlinear dynamical systems, frequently occurs in gene expression motifs, and has been well explored experimentally and mathematically. However, dependency…

Molecular Networks · Quantitative Biology 2024-01-09 Priya Chakraborty , Ushasi Roy , Sayantari Ghosh

We analyze a class of chemical reaction networks under mass-action kinetics and involving multiple time-scales, whose deterministic and stochastic models display qualitative differences. The networks are inspired by gene-regulatory…

Molecular Networks · Quantitative Biology 2018-01-30 Tomislav Plesa , Radek Erban , Hans G. Othmer

We study the synchronization behavior of a noisy network in which each system is driven by two sources of state-dependent noise: (1) an intrinsic noise which is common among all systems and can be generated by the environment or any…

Dynamical Systems · Mathematics 2021-03-09 Zahra Aminzare , Vaibhav Srivastava

We investigate feedback control of the cooperative dynamics of two coupled neural oscillators that is induced merely by external noise. The interacting neurons are modelled as FitzHugh-Nagumo systems with parameter values at which no…

Chaotic Dynamics · Physics 2009-11-11 B. Hauschildt , N. B. Janson , A. Balanov , E. Schoell

For a class of coupled limit cycle oscillators, we give a condition on a linear coupling operator that is necessary and sufficient for exponential stability of the synchronous solution. We show that with certain modifications our method of…

Adaptation and Self-Organizing Systems · Physics 2010-02-24 Georgi S. Medvedev

Intracellular fluctuations, mainly triggered by gene expression, are an inevitable phenomenon observed in living cells. It influences generation of phenotypic diversity in genetically identical cells. Such variation of cellular components…

Molecular Networks · Quantitative Biology 2017-02-08 Alok Kumar Maity , Pinaki Chaudhury , Suman K. Banik

It is well known that the kinetics of an intracellular biochemical network is stochastic. This is due to intrinsic noise arising from the random timing of biochemical reactions in the network as well as due to extrinsic noise stemming from…

Subcellular Processes · Quantitative Biology 2019-06-05 Emma M. Keizer , Bjorn Bastian , Robert W. Smith , Ramon Grima , Christian Fleck
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