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The propagation of noise through parallel regulatory pathways is a characteristic feature of feed-forward loops in genetic networks. Although the contributions of the direct and indirect regulatory pathways of feed-forward loops to output…

Molecular Networks · Quantitative Biology 2025-07-10 Mintu Nandi , Sudip Chattopadhyay , Suman K Banik

A prominent feature of gene transcription regulatory networks is the presence in large numbers of motifs, i.e, patterns of interconnection, in the networks. One such motif is the feed forward loop (FFL) consisting of three genes X, Y and Z.…

Molecular Networks · Quantitative Biology 2009-11-10 Bhaswar Ghosh , Rajesh Karmakar , Indrani Bose

The presence of noise in non linear dynamical systems can play a constructive role, increasing the degree of order and coherence or evoking improvements in the performance of the system. An example of this positive influence in a biological…

Dynamical Systems · Mathematics 2016-09-07 M. -P. Zorzano , L. Vazquez

Effect of noise in inducing order on various chaotically evolving systems is reviewed, with special emphasis on systems consisting of coupled chaotic elements. In many situations it is observed that the uncoupled elements when driven by…

chao-dyn · Physics 2015-06-24 Manojit Roy , R. E. Amritkar

We study the constructive role of noises in a Lorenz system with functional delay. The effect of delay can change the dynamics of the system to a chaotic one from its steady state. Induced synchronization with white and colored (red and…

Chaotic Dynamics · Physics 2017-07-19 Soumen Majhi , Bidesh K. Bera , Santo Banerjee , Dibakar Ghosh

We consider a one-dimensional directional array of diffusively coupled oscillators. They are perturbed by the injection of a small additive noise, typically orders of magnitude smaller than the oscillation amplitude, and the system is…

Disordered Systems and Neural Networks · Physics 2019-01-09 Clement Zankoc , Duccio Fanelli , Francesco Ginelli , Roberto Livi

Networks of interacting, communicating subsystems are common in many fields, from ecology, biology, epidemiology to engineering and robotics. In the presence of noise and uncertainty, inter- actions between the individual components can…

Statistical Mechanics · Physics 2017-11-01 Ira B. Schwartz , Klimka Szwaykowska , Thomas W. Carr

We study ensembles of globally coupled, nonidentical phase oscillators subject to correlated noise, and we identify several important factors that cause noise and coupling to synchronize or desychronize a system. By introducing noise in…

Adaptation and Self-Organizing Systems · Physics 2013-09-26 Yi Ming Lai , Mason A. Porter

The problem of synchronization in heterogeneous networks of linear systems with nonlinear delayed diffusive coupling is considered. The network is presented in new coordinates mean-field dynamics and synchronization errors. Thus the problem…

Adaptation and Self-Organizing Systems · Physics 2022-05-11 Sergei A. Plotnikov

We describe how noise propagates through a network by calculating the variance of the outputs. Using stochastic calculus and dynamical systems theory, we study the network topologies that accentuate or alleviate the effect of random…

Molecular Networks · Quantitative Biology 2011-08-15 Dionysios Barmpoutis , Richard M. Murray

Signal processing in biological systems is delicately executed by specialised networks, which are modular assemblies of network motifs. The motifs are independently functional circuits found in enormous numbers in any living cell. A very…

Molecular Networks · Quantitative Biology 2016-12-08 Tarunendu Mapder

The synchronized phase of globally coupled nonlinear oscillators subject to noise fluctuations is studied by means of a new analytical approach able to tackle general couplings, nonlinearities, and noise temporal correlations. Our results…

Disordered Systems and Neural Networks · Physics 2009-10-31 Esteban Moro , Angel Sanchez

Biological systems rely on robust internal information processing: Survival depends on highly reproducible dynamics of regulatory processes. Biological information processing elements, however, are intrinsically noisy (genetic switches,…

Molecular Networks · Quantitative Biology 2009-11-10 Konstantin Klemm , Stefan Bornholdt

Rhythmic activities that alternate between coherent and incoherent phases are ubiquitous in chemical, ecological, climate, or neural systems. Despite their importance, general mechanisms for their emergence are little understood. In order…

Adaptation and Self-Organizing Systems · Physics 2022-06-01 Max Thiele , Rico Berner , Peter A. Tass , Eckehard Schöll , Serhiy Yanchuk

To learn and reason in the presence of uncertainty, the brain must be capable of imposing some form of regularization. Here we suggest, through theoretical and computational arguments, that the combination of noise with synchronization…

Neurons and Cognition · Quantitative Biology 2013-12-06 Jake Bouvrie , Jean-Jacques Slotine

We study the interplay between diversity and noise in a 3D network of FitzHugh-Nagumo elements, with topology and dimensions chosen to model a pancreatic beta-cell cluster, as an example of an excitable cell network. Our results show that…

Biological Physics · Physics 2022-03-30 Stefano Scialla , Marco Patriarca , Els Heinsalu

We study the effect of a weak random additive noise in a linear chain of N locally-coupled logistic maps at the edge of chaos. Maps tend to synchronize for a strong enough coupling, but if a weak noise is added, very intermittent…

Statistical Mechanics · Physics 2015-06-05 Alessandro Pluchino , Andrea Rapisarda , Constantino Tsallis

We study the effects of nonzero time delays in stochastic synchronization problems with linear couplings in complex networks. We consider two types of time delays: transmission delays between interacting nodes and local delays at each node…

Statistical Mechanics · Physics 2012-12-03 D. Hunt , B. K. Szymanski , G. Korniss

Coupling frequently enhances noise-induced coherence and synchronization in interacting nonlinear systems, but it does so separately. In principle collective stochastic coherence and synchronizability are incompatible phenomena, since…

Adaptation and Self-Organizing Systems · Physics 2015-06-17 Pablo Balenzuela , Pau Rué , Stefano Boccaletti , Jordi García-Ojalvo

Oscillators coupled in a network can synchronize with each other to yield a coherent population rhythm. If multiple such networks are coupled together, the question arises whether these rhythms will synchronize. We investigate the impact of…

Adaptation and Self-Organizing Systems · Physics 2016-12-22 John Hongyu Meng , Hermann Riecke
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