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The cores of edge dislocations, edge dislocation dipoles and edge dislocation loops in planar graphene have been studied by means of periodized discrete elasticity models. To build these models, we have found a way to discretize linear…

Materials Science · Physics 2008-08-07 A. Carpio , L. L. Bonilla

Epithelial monolayers are a central building block of complex organisms. Topological defects have emerged as important elements for single cell behavior in flat epithelia. Here we theoretically study such defects in a three-dimensional…

Biological Physics · Physics 2025-02-19 Oliver M. Drozdowski , Ulrich S. Schwarz

In this work we investigate the role of the symmetry of the Lagrangian on the existence of defects in systems of coupled scalar fields. We focus attention mainly on solutions where defects may nest defects. When space is non-compact we find…

High Energy Physics - Theory · Physics 2009-10-31 D. Bazeia , H. Boschi-Filho , F. A. Brito

Wasps, bees, ants and termites all make effective use of their environment and resources by displaying collective swarm intelligence. Termite colonies - for instance - build nests with a complexity far beyond the comprehension of the…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Vitorino Ramos , Carlos Fernandes , Agostinho C. Rosa

Several systems involve spatial arrangements of elements such as molecules or cells, the characterization of which bears important implications to biological and physical investigations. Traditional approaches to quantify spatial order and…

Tissues and Organs · Quantitative Biology 2007-09-19 Luciano da Fontoura Costa , Fernando Rocha , Silene Araujo de Lima

The interplay between geometry, topology and order can lead to geometric frustration that profoundly affects the shape and structure of a curved surface. In this commentary we show how frustration in this context can result in the faceting…

Soft Condensed Matter · Physics 2016-02-02 Mark Bowick , Rastko Sknepnek

In swarms of flying insects, the motions of individuals are largely uncoordinated with those of their neighbors, unlike the highly ordered motion of bird flocks. However, it has been observed that insects may transiently form pairs with…

The use of pyramid elements is crucial to the construction of efficient hex-dominant meshes. For conforming nodal finite element methods with mixed element types, it is advantageous for nodal distributions on the faces of the pyramid to…

Numerical Analysis · Mathematics 2014-12-17 Jesse Chan , T. Warburton

We study the ordered equilibrium structures of patchy particles where the patches are located on the surface of the colloid such that they form a regular tetrahedron. Using optimization techniques based on ideas of evolutionary algorithms…

Soft Condensed Matter · Physics 2015-06-05 G. Doppelbauer , E. G. Noya , E. Bianchi , G. Kahl

Orientational order, encoded in anisotropic fields, plays an important role during the development of an organism. A striking example of this is the freshwater polyp Hydra, where topological defects in the muscle fiber orientation have been…

Biological Physics · Physics 2023-03-24 Zihang Wang , M. Cristina Marchetti , Fridtjof Brauns

This paper proposes a systematic generalized formulation for calculating both atomic shuffling and shear candidates for a given compound twinning mode in hexagonal closed-packed metals. Although shuffles play an important role in the…

Materials Science · Physics 2013-10-28 Haitham El Kadiri , Christopher D. Barrett , Mark A. Tschopp

Some zeta functions which are naturally attached to the locally homogeneous vector bundles over compact locally symmetric spaces of rank one are investigated. We prove that such functions can be expressed in terms of entire functions whose…

Number Theory · Mathematics 2016-05-02 M. Avdispahić , Dž. Gušić , D. Kamber

Topological defects, which are singular points in a director field, play a major role in shaping active systems. Here, we experimentally study topological defects and the flow patterns around them, that are formed during the highly rapid…

Soft Condensed Matter · Physics 2024-03-20 Victor Yashunsky , Daniel J. G. Pearce , Gil Ariel , Avraham Be'er

We investigate the self-organization of point-particles with short-range interactions modeled via simple 1D and 2D Hubbard-like models. We show how various properties emerge such as, boson-like ordering leading to topological structures in…

Strongly Correlated Electrons · Physics 2020-09-08 Ioannis Kleftogiannis , Ilias Amanatidis

Rod-shaped bacteria, such as Escherichia coli, commonly live forming mounded colonies. They initially grow two-dimensionally on a surface and finally achieve three-dimensional growth. While it was recently reported that three-dimensional…

Soft Condensed Matter · Physics 2022-12-23 Takuro Shimaya , Kazumasa A. Takeuchi

Can the presence of molecular-tilt order significantly affect the shapes of lipid bilayer membranes, particularly membrane shapes with narrow necks? Motivated by the propensity for tilt order and the common occurrence of narrow necks in the…

Soft Condensed Matter · Physics 2009-11-13 Hongyuan Jiang , Greg Huber , Robert A. Pelcovits , Thomas R. Powers

We propose new topological insulators in hexagonal wurtzite-type binary compounds based on the first principles calculations. It is found that two compounds AgI and AuI are three-dimensional topological insulators with a naturally opened…

Materials Science · Physics 2013-10-21 X. M. Zhang , R S. Ma , X. C. Liu , E. K. Liu , G. D. Liu , Z. Y. Liu , W. H. Wang , G. H. Wu

Flocks of birds and schools of fish are familiar examples of spatial patterns formed by living organisms. In contrast to the patterns on the skins of, say, zebra and giraffe, the patterns of our interest are {\it transient} although…

Populations and Evolution · Quantitative Biology 2007-05-23 Debashish Chowdhury , Katsuhiro Nishinari , Andreas Schadschneider

Twisting two atomic layers produces a geometric moire pattern, but bonding-induced interfacial reconstruction fundamentally transforms this into an ordered dislocation network - a distinction obscured in weakly-bonded van der Waals systems.…

Topological physics opens a door towards flexible routing and resilient localization of waves of various nature. Recently proposed higher-order topological insulators provide advanced control over wave localization in the structures of…